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Aliases for SNORA47 Gene

Subcategory (RNA class) for SNORA47 Gene


Quality Score for this RNA gene is


Aliases for SNORA47 Gene

  • Small Nucleolar RNA, H/ACA Box 47 2 3 5
  • HBI-115 3

External Ids for SNORA47 Gene

ORGUL Members for SNORA47 Gene

Previous GeneCards Identifiers for SNORA47 Gene

  • GC05P076412
  • GC05M076412
  • GC05M076376
  • GC05M071582

Summaries for SNORA47 Gene

GeneCards Summary for SNORA47 Gene

SNORA47 (Small Nucleolar RNA, H/ACA Box 47) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA47 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA47 Gene

Genomics for SNORA47 Gene

GeneHancer (GH) Regulatory Elements for SNORA47 Gene

Promoters and enhancers for SNORA47 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I077029 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.6 +49.9 49900 2.5 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 AGGF1 ENSG00000250615 SNORA47 ZBED3-AS1 CRHBP
GH05I076869 Enhancer 0.7 ENCODE 10.3 +212.3 212280 0.2 CTCF PKNOX1 RB1 ZNF76 RAD21 RFX5 ZNF335 CC2D1A ARID2 SCRT2 CRHBP ZBED3-AS1 SNORA47 ENSG00000225407 F2R S100Z PIR54977 GC05P076755
GH05I076868 Enhancer 0.7 Ensembl 10.3 +212.5 212470 0.2 CTCF PKNOX1 RB1 ZNF76 RAD21 RFX5 ZNF335 CC2D1A POLR3A ARID2 CRHBP ZBED3-AS1 SNORA47 ENSG00000225407 F2R S100Z PIR54977 GC05P076755
GH05I077076 Enhancer 0.9 Ensembl ENCODE 0.8 +3.1 3070 1.4 CTCF RB1 ZNF223 SIN3A RAD21 ZNF335 E2F1 CTBP1 POLR2A ZNF207 GC05M077073 RPL7P23 AGGF1 GC05M077081 SNORA47 ZBED3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA47 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA47 gene promoter:

Genomic Locations for SNORA47 Gene

Genomic Locations for SNORA47 Gene
138 bases
Minus strand

Genomic View for SNORA47 Gene

Genes around SNORA47 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA47 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA47 Gene

Proteins for SNORA47 Gene

Post-translational modifications for SNORA47 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA47 Gene

Domains & Families for SNORA47 Gene

Gene Families for SNORA47 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA47: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA47 Gene

Function for SNORA47 Gene

Phenotypes From GWAS Catalog for SNORA47 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA47 Gene

Localization for SNORA47 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA47 Gene

Pathways & Interactions for SNORA47 Gene

SuperPathways for SNORA47 Gene

No Data Available

Interacting Proteins for SNORA47 Gene

Gene Ontology (GO) - Biological Process for SNORA47 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORA47 Gene

Drugs & Compounds for SNORA47 Gene

No Compound Related Data Available

Transcripts for SNORA47 Gene

mRNA/cDNA for SNORA47 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA47 Gene

No ASD Table

Relevant External Links for SNORA47 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORA47 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA47 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA47 Gene:


SOURCE GeneReport for Unigene cluster for SNORA47 Gene:

genes like me logo Genes that share expression patterns with SNORA47: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA47 Gene

Orthologs for SNORA47 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA47 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORA47 34
  • 100 (a)
(Canis familiaris)
Mammalia SNORA47 34
  • 85 (a)
(Bos Taurus)
Mammalia SNORA47 34
  • 84 (a)
(Mus musculus)
Mammalia Snora47 34
  • 80 (a)
(Monodelphis domestica)
Mammalia SNORA47 34
  • 79 (a)
(Ornithorhynchus anatinus)
Mammalia SNORA47 34
  • 62 (a)
(Gallus gallus)
Aves SNORA47 34
  • 65 (a)
(Anolis carolinensis)
Reptilia SNORA47 34
  • 64 (a)
(Danio rerio)
Actinopterygii SNORA47 34
  • 53 (a)
Species where no ortholog for SNORA47 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA47 Gene

Gene Tree for SNORA47 (if available)
Gene Tree for SNORA47 (if available)

Paralogs for SNORA47 Gene

No data available for Paralogs for SNORA47 Gene

Variants for SNORA47 Gene

Sequence variations from dbSNP and Humsavar for SNORA47 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000412859 -- 77,081,871(-) A/C upstream_transcript_variant
rs1000870471 -- 77,082,303(-) T/C upstream_transcript_variant
rs1001580088 -- 77,080,787(-) C/T upstream_transcript_variant
rs1001926127 -- 77,081,026(-) C/T upstream_transcript_variant
rs1005705795 -- 77,081,538(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA47 Gene

Variant ID Type Subtype PubMed ID
nsv1027236 CNV gain 25217958
nsv469515 CNV loss 16826518
nsv823102 CNV gain 20364138

Additional Variant Information for SNORA47 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA47 Gene

Disorders for SNORA47 Gene

Additional Disease Information for SNORA47

No disorders were found for SNORA47 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA47 Gene

Publications for SNORA47 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 58
  3. Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. (PMID: 20581827) Voight BF … GIANT Consortium (Nature genetics 2010) 44 58
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORA47 Gene

Sources for SNORA47 Gene

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