Aliases for SNORA44 Gene

Subcategory (RNA class) for SNORA44 Gene

snoRNA

Number of RNA Genes sources:

3 / 14

Aliases for SNORA44 Gene

  • Small Nucleolar RNA, H/ACA Box 44 2 3 5
  • SNORA44 2 174
  • ACA44 SnoRNA 3
  • RF00405 172
  • ACA44 3

External Ids for SNORA44 Gene

Previous GeneCards Identifiers for SNORA44 Gene

  • GC01M028779
  • GC01M028908
  • GC01M028911
  • GC01M028918
  • GC01M028582
  • GC01M028588
  • GC01M028629
  • GC01M028634
  • GC01M028642
  • GC01M028591
  • GC01M028596
  • GC01M028598
  • GC01M028603
  • GC01M028605
  • GC01M028610
  • GC01M028616
  • GC01M028624

Summaries for SNORA44 Gene

GeneCards Summary for SNORA44 Gene

SNORA44 (Small Nucleolar RNA, H/ACA Box 44) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORA44 include Glanders.

Rfam classification for SNORA44 Gene

  • Small nucleolar RNA SNORA44

Additional gene information for SNORA44 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA44 Gene

Genomics for SNORA44 Gene

GeneHancer (GH) Regulatory Elements for SNORA44 Gene

Promoters and enhancers for SNORA44 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J028578 Promoter/Enhancer 1.8 Ensembl ENCODE CraniofacialAtlas 500.7 -0.7 -688 4.5 HNRNPK ZNF217 EP300 CTCF NRF1 MYC TCF12 POLR2G USF1 SP1 SNORA16A SNORA44 SNORA61 lnc-TRNAU1AP-1 piR-36444 GMEB1 TRNAU1AP SNHG12 PHACTR4 YTHDF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA44 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA44 gene promoter:
  • AML1a
  • AREB6
  • CP2
  • GR-beta
  • Meis-1
  • Meis-1a
  • Meis-1b
  • SEF-1 (1)
  • STAT5A
  • TGIF

Genomic Locations for SNORA44 Gene

Genomic Locations for SNORA44 Gene
chr1:28,580,381-28,580,512
(GRCh38/hg38)
Size:
132 bases
Orientation:
Minus strand
chr1:28,905,050-28,909,495
(GRCh37/hg19)
Size:
4,446 bases
Orientation:
Minus strand

Genomic View for SNORA44 Gene

Genes around SNORA44 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA44 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA44 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA44 Gene

Proteins for SNORA44 Gene

Post-translational modifications for SNORA44 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA44 Gene

Domains & Families for SNORA44 Gene

Gene Families for SNORA44 Gene

genes like me logo Genes that share domains with SNORA44: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA44 Gene

Function for SNORA44 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA44 Gene

Localization for SNORA44 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA44 gene
Compartment Confidence
cytosol 2
plasma membrane 1
extracellular 1
cytoskeleton 1
mitochondrion 1
nucleus 1
lysosome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA44 Gene

Pathways & Interactions for SNORA44 Gene

PathCards logo

SuperPathways for SNORA44 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNORA44 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA44 Gene

Drugs & Compounds for SNORA44 Gene

No Compound Related Data Available

Transcripts for SNORA44 Gene

mRNA/cDNA for SNORA44 Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 ENA transcripts :
1 Rfam transcripts :
1 snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA44 Gene

No ASD Table

Relevant External Links for SNORA44 Gene

GeneLoc Exon Structure for
SNORA44

Expression for SNORA44 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA44

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA44 Gene

Orthologs for SNORA44 Gene

Evolution for SNORA44 Gene

ENSEMBL:
Gene Tree for SNORA44 (if available)
TreeFam:
Gene Tree for SNORA44 (if available)

No data available for Orthologs for SNORA44 Gene

Paralogs for SNORA44 Gene

No data available for Paralogs for SNORA44 Gene

Variants for SNORA44 Gene

Additional dbSNP identifiers (rs#s) for SNORA44 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA44 Gene

Variant ID Type Subtype PubMed ID
nsv545916 CNV gain 21841781

Additional Variant Information for SNORA44 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA44

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA44 Gene

Disorders for SNORA44 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNORA44 Gene - From: DISEASES

Disorder Aliases PubMed IDs
glanders
  • farcy pipes
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORA44

genes like me logo Genes that share disorders with SNORA44: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORA44 Gene

Publications for SNORA44 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 54
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 54
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 54

Products for SNORA44 Gene

Sources for SNORA44 Gene