Aliases for SNORA40B Gene

Data sources for SNORA40B Gene:

Subcategory (RNA class) for SNORA40B Gene

snoRNA

Aliases for SNORA40B Gene

External Ids for SNORA40B Gene

Previous GeneCards Identifiers for SNORA40B Gene

  • GC00U936737
  • GC02U904368

Summaries for SNORA40B Gene

GeneCards Summary for SNORA40B Gene

SNORA40B (Small Nucleolar RNA, H/ACA Box 40B) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA40B Gene

  • Small nucleolar RNA SNORA40

Additional gene information for SNORA40B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA40B Gene

Genomics for SNORA40B Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA40B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J135244 Enhancer 0.9 Ensembl ENCODE 10.3 +108.6 108573 2 FEZF1 SIX4 CEBPB CUX1 EP300 GABPA CTBP1 ZNF843 TCF7L2 JUND MAP3K19 SNORA40B DARS1 ZRANB3 piR-39341-199 FJ601684-255 RAB3GAP1
GH02J135164 Enhancer 0.7 Ensembl ENCODE 11.8 +28.0 28031 1.1 MBD2 CUX1 CTBP1 RAD21 PKNOX1 FOSL2 MNT FOS MAP3K19 SNORA40B RAB3GAP1 HSALNG0019048 HSALNG0019049 ZRANB3
GH02J135004 Enhancer 0.7 Ensembl 9.8 -132.1 -132128 0.8 CTCF REST TRIM22 SMC3 RAD21 KLF9 TCF7L2 MBD1 MAX RB1 MAP3K19 RAB3GAP1 SNORA40B R3HDM1 ZRANB3 DARS1 MCM6 MK280269-038 piR-57337-024 HSALNG0019043
GH02J135092 Enhancer 0.6 Ensembl ENCODE 11.1 -43.1 -43086 2.3 FEZF1 HOMEZ ZNF843 HNF4A ELF3 CHD4 MAP3K19 RAB3GAP1 SNORA40B ZRANB3 piR-42700-068 SNODB732
GH02J135005 Enhancer 0.4 Ensembl 9.8 -130.6 -130627 0.8 HLF EZH2 NFIC MAP3K19 RAB3GAP1 SNORA40B R3HDM1 ZRANB3 DARS1 MK280269-038 piR-57337-024 HSALNG0019043 lnc-ZRANB3-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA40B on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNORA40B Gene

Latest Assembly
chr2:135,136,628-135,136,755
(GRCh38/hg38)
Size:
128 bases
Orientation:
Plus strand

Previous Assembly
chr2:135,894,198-135,894,325
(GRCh37/hg19 by Entrez Gene)
Size:
128 bases
Orientation:
Plus strand

chr2:135,894,198-135,894,325
(GRCh37/hg19 by Ensembl)
Size:
128 bases
Orientation:
Plus strand

Genomic View for SNORA40B Gene

Genes around SNORA40B on UCSC Golden Path with GeneCards custom track
SNORA40B in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNORA40B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA40B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA40B Gene

Proteins for SNORA40B Gene

Post-translational modifications for SNORA40B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA40B Gene

Domains & Families for SNORA40B Gene

Gene Families for SNORA40B Gene

genes like me logo Genes that share domains with SNORA40B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA40B Gene

Function for SNORA40B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA40B Gene

Localization for SNORA40B Gene

Gene Ontology (GO) - Cellular Components for SNORA40B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA40B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA40B Gene

Pathways & Interactions for SNORA40B Gene

PathCards logo

SuperPathways for SNORA40B Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA40B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA40B: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA40B Gene

Drugs & Compounds for SNORA40B Gene

No Compound Related Data Available

Transcripts for SNORA40B Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA40B Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006607B4_9606 snoRNA 128 5

RefSeq: NR_145723,

Ensembl: ENST00000385573 (view in UCSC) ,

Rfam: RF00561,

snoDB: SNODB498,

snOPY: Homo_sapiens300501,

URS0001BC95D1_9606 snoRNA 128 1

Rfam: RF00561,

SNORA40B in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA40B Gene

No ASD Table

Relevant External Links for SNORA40B Gene

GeneLoc Exon Structure for
SNORA40B

No data available for mRNA/cDNA for SNORA40B Gene

Expression for SNORA40B Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA40B Gene

Orthologs for SNORA40B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA40B Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA40 31
  • 98 (a)
ManyToMany
Cow
(Bos Taurus)
Mammalia SNORA40 31
  • 89 (a)
OneToMany
Oppossum
(Monodelphis domestica)
Mammalia SNORA40 31
  • 79 (a)
OneToMany
Mouse
(Mus musculus)
Mammalia Gm23320 31
  • 77 (a)
ManyToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORA40 31
  • 74 (a)
OneToMany
Chicken
(Gallus gallus)
Aves SNORA40 31
  • 65 (a)
OneToMany
Species where no ortholog for SNORA40B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for SNORA40B Gene

ENSEMBL:
Gene Tree for SNORA40B (if available)
TreeFam:
Gene Tree for SNORA40B (if available)

Paralogs for SNORA40B Gene

No data available for Paralogs for SNORA40B Gene

Variants for SNORA40B Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNORA40B Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for SNORA40B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA40B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA40B Gene

Disorders for SNORA40B Gene

Additional Disease Information for SNORA40B

No disorders were found for SNORA40B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA40B Gene

Publications for SNORA40B Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3

No data available for Mastermind for SNORA40B Gene

Products for SNORA40B Gene

Sources for SNORA40B Gene