Aliases for SNORA4 Gene

Subcategory (RNA class) for SNORA4 Gene

snoRNA

Number of RNA Genes sources:

3 / 14

Aliases for SNORA4 Gene

  • Small Nucleolar RNA, H/ACA Box 4 2 3 5
  • SNORA4 2 174
  • ACA4 Small Nucleolar RNA 3
  • ACA4 SnoRNA 3
  • RF00394 172
  • ACA4 3

External Ids for SNORA4 Gene

Previous GeneCards Identifiers for SNORA4 Gene

  • GC03P187997
  • GC03P187999
  • GC03P186510
  • GC03P186514
  • GC03P186517
  • GC03P186520
  • GC03P186526
  • GC03P186531
  • GC03P186537
  • GC03P186546
  • GC03P186554
  • GC03P186572
  • GC03P186791
  • GC03P186797
  • GC03P186845
  • GC03P186849
  • GC03P186851
  • GC03P186802
  • GC03P186808
  • GC03P186813
  • GC03P186818
  • GC03P186823
  • GC03P186830
  • GC03P186836
  • GC03P186840

Summaries for SNORA4 Gene

GeneCards Summary for SNORA4 Gene

SNORA4 (Small Nucleolar RNA, H/ACA Box 4) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA4 Gene

  • Small nucleolar RNA SNORA4

Additional gene information for SNORA4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA4 Gene

Genomics for SNORA4 Gene

GeneHancer (GH) Regulatory Elements for SNORA4 Gene

Promoters and enhancers for SNORA4 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA4 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA4 gene promoter:
  • c-Myc
  • Elk-1
  • Evi-1
  • Lmo2
  • Max
  • Meis-1
  • SREBP-1a
  • SREBP-1b
  • SREBP-1c
  • STAT5A

Genomic Locations for SNORA4 Gene

Genomic Locations for SNORA4 Gene
chr3:186,787,612-186,787,749
(GRCh38/hg38)
Size:
138 bases
Orientation:
Plus strand
chr3:186,505,401-186,505,538
(GRCh37/hg19)
Size:
138 bases
Orientation:
Plus strand

Genomic View for SNORA4 Gene

Genes around SNORA4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA4 Gene

Proteins for SNORA4 Gene

Post-translational modifications for SNORA4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA4 Gene

Domains & Families for SNORA4 Gene

Gene Families for SNORA4 Gene

genes like me logo Genes that share domains with SNORA4: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA4 Gene

Function for SNORA4 Gene

Phenotypes From GWAS Catalog for SNORA4 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA4 Gene

Localization for SNORA4 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA4 gene
Compartment Confidence
plasma membrane 1
extracellular 1
cytoskeleton 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA4 Gene

Pathways & Interactions for SNORA4 Gene

PathCards logo

SuperPathways for SNORA4 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNORA4 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA4 Gene

Drugs & Compounds for SNORA4 Gene

No Compound Related Data Available

Transcripts for SNORA4 Gene

mRNA/cDNA for SNORA4 Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 ENA transcripts :
1 Rfam transcripts :
1 snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA4 Gene

No ASD Table

Relevant External Links for SNORA4 Gene

GeneLoc Exon Structure for
SNORA4

Expression for SNORA4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA4 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA4

SOURCE GeneReport for Unigene cluster for SNORA4 Gene:

Hs.743897
genes like me logo Genes that share expression patterns with SNORA4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA4 Gene

Orthologs for SNORA4 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA4 31
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA4 31
  • 85 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm24616 31
  • 84 (a)
ManyToMany
Gm25588 31
  • 79 (a)
ManyToMany
Gm25582 31
  • 76 (a)
ManyToMany
Gm24460 31
  • 75 (a)
ManyToMany
Gm24728 31
  • 70 (a)
ManyToMany
Gm26495 31
  • 67 (a)
ManyToMany
Gm24500 31
  • 67 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA4 31
  • 68 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA4 31
  • 63 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA4 31
  • 64 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA4 31
  • 62 (a)
OneToMany
Species where no ortholog for SNORA4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA4 Gene

ENSEMBL:
Gene Tree for SNORA4 (if available)
TreeFam:
Gene Tree for SNORA4 (if available)

Paralogs for SNORA4 Gene

No data available for Paralogs for SNORA4 Gene

Variants for SNORA4 Gene

Additional dbSNP identifiers (rs#s) for SNORA4 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA4 Gene

Variant ID Type Subtype PubMed ID
dgv5005n100 CNV gain 25217958
esv2759206 CNV loss 17122850
esv34136 CNV loss 18971310
esv3893839 CNV gain 25118596
nsv1012615 CNV gain 25217958

Additional Variant Information for SNORA4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA4 Gene

Disorders for SNORA4 Gene

Additional Disease Information for SNORA4

No disorders were found for SNORA4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA4 Gene

Publications for SNORA4 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 54
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 54
  3. TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions. (PMID: 27609421) Banks CA … Washburn MP (Molecular & cellular proteomics : MCP 2016) 3 54
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 54

Products for SNORA4 Gene

Sources for SNORA4 Gene