Small nucleolar RNAs (snoRNAs) are small noncoding RNAs involved in RNA processing. Box H/ACA snoRNAs, such as SNORA45, direct the conversion of uridine to pseudouridine at specific residues of ribosomal RNAs or small nuclear RNAs (snRNAs) (Gu et al., 2005).[supplied by OMIM, Mar 2008] See more...

Aliases for SNORA3B Gene

Subcategory (RNA class) for SNORA3B Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for SNORA3B Gene

  • Small Nucleolar RNA, H/ACA Box 3B 2 3 5
  • Small Nucleolar RNA, H/ACA Box 45B 2 3
  • Small Nucleolar RNA, H/ACA Box 45 2 3
  • SNORA45 3 176
  • ACA3-2 SnoRNA 3
  • SNORA45B 3
  • SNORA3B 2
  • RF00334 174
  • ACA3-2 3

External Ids for SNORA3B Gene

Previous HGNC Symbols for SNORA3B Gene

  • SNORA45
  • SNORA45B

Previous GeneCards Identifiers for SNORA3B Gene

  • GC11P008729
  • GC11P008735
  • GC11P008696
  • GC11P008701
  • GC11P008708
  • GC11P008711
  • GC11P008716
  • GC11P008719
  • GC11P008723
  • GC11P008726

Summaries for SNORA3B Gene

Entrez Gene Summary for SNORA3B Gene

  • Small nucleolar RNAs (snoRNAs) are small noncoding RNAs involved in RNA processing. Box H/ACA snoRNAs, such as SNORA45, direct the conversion of uridine to pseudouridine at specific residues of ribosomal RNAs or small nuclear RNAs (snRNAs) (Gu et al., 2005).[supplied by OMIM, Mar 2008]

GeneCards Summary for SNORA3B Gene

SNORA3B (Small Nucleolar RNA, H/ACA Box 3B) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA3B Gene

  • Small nucleolar RNA SNORA3/SNORA45 family

Additional gene information for SNORA3B Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA3B Gene

Genomics for SNORA3B Gene

GeneHancer (GH) Regulatory Elements for SNORA3B Gene

Promoters and enhancers for SNORA3B Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA3B on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORA3B Gene

Genomic Locations for SNORA3B Gene
chr11:8,685,439-8,685,569
(GRCh38/hg38)
Size:
131 bases
Orientation:
Plus strand
chr11:8,706,986-8,707,116
(GRCh37/hg19)
Size:
131 bases
Orientation:
Plus strand

Genomic View for SNORA3B Gene

Genes around SNORA3B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA3B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA3B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA3B Gene

Proteins for SNORA3B Gene

Post-translational modifications for SNORA3B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA3B Gene

Domains & Families for SNORA3B Gene

Gene Families for SNORA3B Gene

genes like me logo Genes that share domains with SNORA3B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA3B Gene

Function for SNORA3B Gene

Phenotypes From GWAS Catalog for SNORA3B Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA3B Gene

Localization for SNORA3B Gene

Gene Ontology (GO) - Cellular Components for SNORA3B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA3B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA3B Gene

Pathways & Interactions for SNORA3B Gene

PathCards logo

SuperPathways for SNORA3B Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA3B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA3B: view

No data available for Pathways by source and SIGNOR curated interactions for SNORA3B Gene

Drugs & Compounds for SNORA3B Gene

No Compound Related Data Available

Transcripts for SNORA3B Gene

mRNA/cDNA for SNORA3B Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) ENA transcripts :
(1) Rfam transcripts :
(1) snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA3B Gene

No ASD Table

Relevant External Links for SNORA3B Gene

GeneLoc Exon Structure for
SNORA3B
ECgene alternative splicing isoforms for
SNORA3B

Expression for SNORA3B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA3B Gene:

SNORA3B
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA3B Gene

Orthologs for SNORA3B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA3B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA3 33
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA3 33
  • 88 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA3 33
  • 75 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA3 33 33
  • 73 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm25539 33
  • 73 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA3 33
  • 66 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA3 33
  • 64 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA3 33 33 33 33
  • 70 (a)
ManyToMany
Species where no ortholog for SNORA3B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA3B Gene

ENSEMBL:
Gene Tree for SNORA3B (if available)
TreeFam:
Gene Tree for SNORA3B (if available)

Paralogs for SNORA3B Gene

No data available for Paralogs for SNORA3B Gene

Variants for SNORA3B Gene

Sequence variations from dbSNP and Humsavar for SNORA3B Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1001394543 -- 8,684,284(+) G/A upstream_transcript_variant
rs1002378478 -- 8,685,051(+) G/C upstream_transcript_variant
rs1003447583 -- 8,685,994(+) G/A downstream_transcript_variant
rs1003957078 -- 8,683,743(+) T/C upstream_transcript_variant
rs1004506457 -- 8,685,356(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA3B Gene

Variant ID Type Subtype PubMed ID
nsv499766 OTHER inversion 21111241
nsv7215 OTHER inversion 18451855
nsv975880 CNV duplication 23825009

Additional Variant Information for SNORA3B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA3B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA3B Gene

Disorders for SNORA3B Gene

Additional Disease Information for SNORA3B

No disorders were found for SNORA3B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA3B Gene

Publications for SNORA3B Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 56
  2. A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotes. (PMID: 16361266) Gu AD … Qu LH (Nucleic acids research 2005) 2 3 56
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 56
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 56
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 56

Products for SNORA3B Gene

Sources for SNORA3B Gene