Aliases for SNORA3A Gene

Subcategory (RNA class) for SNORA3A Gene

snoRNA

Number of RNA Genes sources:

4 / 17

Aliases for SNORA3A Gene

  • Small Nucleolar RNA, H/ACA Box 3A 2 3 5
  • Small Nucleolar RNA, H/ACA Box 45A 2 3
  • Small Nucleolar RNA, H/ACA Box 3 2 3
  • SNORA3A 2 5
  • SNORA3 3 170
  • ACA3 2 3
  • ACA3 Small Nucleolar RNA 3
  • ACA3 SnoRNA 3
  • SNORA45A 3
  • SNODB104 177
  • RF00334 168

External Ids for SNORA3A Gene

Previous HGNC Symbols for SNORA3A Gene

  • SNORA3
  • SNORA45A

Previous GeneCards Identifiers for SNORA3A Gene

  • GC11P008728
  • GC11P008732
  • GC11P008725
  • GC11P008722
  • GC11P008692
  • GC11P008699
  • GC11P008704
  • GC11P008710
  • GC11P008715

Summaries for SNORA3A Gene

GeneCards Summary for SNORA3A Gene

SNORA3A (Small Nucleolar RNA, H/ACA Box 3A) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORA3A include Cataract 4, Multiple Types and Cataract 34, Multiple Types.

Rfam classification for SNORA3A Gene

  • Small nucleolar RNA SNORA3/SNORA45 family

Additional gene information for SNORA3A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA3A Gene

Genomics for SNORA3A Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA3A Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA3A on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNORA3A Gene

Genomic Locations for SNORA3A Gene
chr11:8,684,227-8,684,356
(GRCh38/hg38)
Size:
130 bases
Orientation:
Plus strand
chr11:8,705,774-8,705,903
(GRCh37/hg19)
Size:
130 bases
Orientation:
Plus strand

Genomic View for SNORA3A Gene

Genes around SNORA3A on UCSC Golden Path with GeneCards custom track
SNORA3A in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORA3A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA3A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA3A Gene

Proteins for SNORA3A Gene

Post-translational modifications for SNORA3A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA3A Gene

Domains & Families for SNORA3A Gene

Gene Families for SNORA3A Gene

genes like me logo Genes that share domains with SNORA3A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA3A Gene

Function for SNORA3A Gene

Phenotypes From GWAS Catalog for SNORA3A Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA3A Gene

Localization for SNORA3A Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA3A gene
Compartment Confidence
plasma membrane 2
extracellular 2
cytoskeleton 2
nucleus 2
cytosol 2
mitochondrion 1
endoplasmic reticulum 1
endosome 1
lysosome 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for SNORA3A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA3A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORA3A Gene

Pathways & Interactions for SNORA3A Gene

PathCards logo

SuperPathways for SNORA3A Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA3A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA3A: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA3A Gene

Drugs & Compounds for SNORA3A Gene

No Compound Related Data Available

Transcripts for SNORA3A Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA3A Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002BF97D_9606 snoRNA 130 7

HGNC: 32586,

RefSeq: NR_002580,

Ensembl: ENST00000364113 (view in UCSC) ,

Rfam: RF00334,

snoDB: SNODB104,

snOPY: Homo_sapiens300733,

ENA: AJ609428.1:1..130:ncRNA,

SNORA3A in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNORA3A Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA3A Gene

No ASD Table

Relevant External Links for SNORA3A Gene

GeneLoc Exon Structure for
SNORA3A

Expression for SNORA3A Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA3A

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA3A Gene

Orthologs for SNORA3A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA3A Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA3 31
  • 99 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORA3 31
  • 95 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORA3 31
  • 94 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm24698 31
  • 87 (a)
OneToMany
Snora3 31
  • 85 (a)
OneToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORA3 31
  • 73 (a)
OneToMany
Oppossum
(Monodelphis domestica)
Mammalia SNORA3 31
  • 69 (a)
OneToMany
Chicken
(Gallus gallus)
Aves SNORA3 31
  • 72 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia SNORA3 31 31 31
  • 69 (a)
ManyToMany
Species where no ortholog for SNORA3A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for SNORA3A Gene

ENSEMBL:
Gene Tree for SNORA3A (if available)
TreeFam:
Gene Tree for SNORA3A (if available)

Paralogs for SNORA3A Gene

No data available for Paralogs for SNORA3A Gene

Variants for SNORA3A Gene

Additional dbSNP identifiers (rs#s) for SNORA3A Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA3A Gene

Variant ID Type Subtype PubMed ID
nsv499766 OTHER inversion 21111241
nsv7215 OTHER inversion 18451855

Additional Variant Information for SNORA3A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA3A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA3A Gene

Disorders for SNORA3A Gene

MalaCards: The human disease database

(6) MalaCards diseases for SNORA3A Gene - From: DISEASES

Disorder Aliases PubMed IDs
cataract 4, multiple types
  • ctrct4
cataract 34, multiple types
  • ctrct34
loeys-dietz syndrome 2
  • lds2
lens disease
  • lens diseases
loeys-dietz syndrome
  • furlong syndrome
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORA3A

genes like me logo Genes that share disorders with SNORA3A: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORA3A Gene

Publications for SNORA3A Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
  4. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J … Bakin A (Journal of molecular biology 1997) 3

Products for SNORA3A Gene

Sources for SNORA3A Gene