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Aliases for SNORA38B Gene

Subcategory (RNA class) for SNORA38B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA38B Gene

  • Small Nucleolar RNA, H/ACA Box 38B 2 3 5
  • Small Nucleolar RNA, H/ACA Box 38B (Retrotransposed) 2

External Ids for SNORA38B Gene

ORGUL Members for SNORA38B Gene

Previous GeneCards Identifiers for SNORA38B Gene

  • GC17U900833
  • GC17P063169
  • GC17P065736
  • GC17P061121

Summaries for SNORA38B Gene

GeneCards Summary for SNORA38B Gene

SNORA38B (Small Nucleolar RNA, H/ACA Box 38B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA38B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA38B Gene

Genomics for SNORA38B Gene

GeneHancer (GH) Regulatory Elements for SNORA38B Gene

Promoters and enhancers for SNORA38B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I067759 Enhancer 0.7 Ensembl ENCODE 0.4 +19.0 19040 1.2 ZNF121 SMAD5 POLR2A FOXK2 IKZF1 CBFA2T3 NR2F2 SNORA38B RPSAP67
GH17I067756 Enhancer 0.7 ENCODE dbSUPER 0.4 +15.9 15877 1.3 SMARCE1 ATF4 CEBPB ZNF530 ZBTB33 CEBPG BPTF SNORA38B RPSAP67
GH17I067750 Enhancer 0.6 ENCODE dbSUPER 0.4 +10.7 10703 1.6 ZNF680 MZF1 SNORA38B RPSAP67
GH17I067753 Enhancer 0.6 ENCODE dbSUPER 0.4 +11.7 11731 0.2 POLR2A POU5F1 SNORA38B RPSAP67
GH17I067765 Enhancer 0.6 ENCODE 0.3 +25.2 25191 0.2 ESRRA USF1 NFYC USF2 MITF NR2C1 NR2F6 CBFA2T2 NR2C2 RPSAP67 SNORA38B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA38B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA38B gene promoter:

Genomic Locations for SNORA38B Gene

Genomic Locations for SNORA38B Gene
chr17:67,740,669-67,740,801
(GRCh38/hg38)
Size:
133 bases
Orientation:
Plus strand
chr17:65,736,785-65,736,917
(GRCh37/hg19)

Genomic View for SNORA38B Gene

Genes around SNORA38B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA38B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA38B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA38B Gene

Proteins for SNORA38B Gene

Post-translational modifications for SNORA38B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA38B Gene

Domains & Families for SNORA38B Gene

Gene Families for SNORA38B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA38B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA38B Gene

Function for SNORA38B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA38B Gene

Localization for SNORA38B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA38B Gene

Pathways & Interactions for SNORA38B Gene

SuperPathways for SNORA38B Gene

No Data Available

Interacting Proteins for SNORA38B Gene

Gene Ontology (GO) - Biological Process for SNORA38B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA38B Gene

Drugs & Compounds for SNORA38B Gene

No Compound Related Data Available

Transcripts for SNORA38B Gene

mRNA/cDNA for SNORA38B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA38B Gene

No ASD Table

Relevant External Links for SNORA38B Gene

GeneLoc Exon Structure for
SNORA38B
ECgene alternative splicing isoforms for
SNORA38B

Expression for SNORA38B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA38B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA38B Gene:

SNORA38B

SOURCE GeneReport for Unigene cluster for SNORA38B Gene:

Hs.693446
genes like me logo Genes that share expression patterns with SNORA38B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA38B Gene

Orthologs for SNORA38B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA38B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA38 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA38 34
  • 85 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23105 34
  • 81 (a)
ManyToMany
Gm24143 34
  • 74 (a)
ManyToMany
Gm25388 34
  • 69 (a)
ManyToMany
Gm25967 34
  • 69 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA38 34
  • 79 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA38 34
  • 58 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA38 34 34
  • 71 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA38 34
  • 54 (a)
OneToMany
Species where no ortholog for SNORA38B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA38B Gene

ENSEMBL:
Gene Tree for SNORA38B (if available)
TreeFam:
Gene Tree for SNORA38B (if available)

Paralogs for SNORA38B Gene

No data available for Paralogs for SNORA38B Gene

Variants for SNORA38B Gene

Sequence variations from dbSNP and Humsavar for SNORA38B Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000004451 -- 67,739,332(+) C/T upstream_transcript_variant
rs1001061069 -- 67,740,884(+) A/G downstream_transcript_variant
rs1002918452 -- 67,739,630(+) G/C upstream_transcript_variant
rs1003109349 -- 67,740,251(+) G/A upstream_transcript_variant
rs1003931620 -- 67,741,150(+) A/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA38B Gene

Variant ID Type Subtype PubMed ID
nsv575915 CNV gain 21841781
nsv511059 OTHER complex 20534489
nsv1120054 OTHER inversion 24896259
nsv1066511 CNV gain 25217958
esv3893036 CNV gain 25118596

Additional Variant Information for SNORA38B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA38B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA38B Gene

Disorders for SNORA38B Gene

Additional Disease Information for SNORA38B

No disorders were found for SNORA38B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA38B Gene

Publications for SNORA38B Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  2. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang JH … Qu LH (Nucleic acids research 2006) 3 58

Products for SNORA38B Gene

Sources for SNORA38B Gene

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