Aliases for SNORA37 Gene

Data sources for SNORA37 Gene:

Subcategory (RNA class) for SNORA37 Gene

snoRNA

Aliases for SNORA37 Gene

External Ids for SNORA37 Gene

Previous GeneCards Identifiers for SNORA37 Gene

  • GC18M050004
  • GC18M051748
  • GC18M048603

Summaries for SNORA37 Gene

GeneCards Summary for SNORA37 Gene

SNORA37 (Small Nucleolar RNA, H/ACA Box 37) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA37 Gene

  • Small nucleolar RNA SNORA30/SNORA37 family

Additional gene information for SNORA37 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA37 Gene

Genomics for SNORA37 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA37 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J054221 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 -1.2 -1218 3.7 ZBTB10 SP1 MXD4 BCL11A NR2C1 ETS1 POLR2A CTCF ELF1 ZIC2 MBD2 SNORA37
GH18J054220 Promoter/Enhancer 0.8 Ensembl ENCODE 250.7 +1.7 1746 1 HDGF TCF12 NKRF PRDM4 KLF1 HLF SNORA37 POLI MBD2 piR-50443-185
GH18J054250 Enhancer 1.1 ENCODE CraniofacialAtlas 12.1 -30.4 -30408 5.5 BCL11A FEZF1 CEBPA FOXA1 KDM6A FOXA2 IRF4 TRIM22 SMAD4 SAP130 MG828559 POLI C18orf54 MBD2 SNORA37 STARD6 lnc-POLI-1 ENSG00000277324
GH18J054246 Enhancer 1 ENCODE CraniofacialAtlas dbSUPER 12.2 -24.9 -24947 2.6 BCL11A FOXA2 EBF1 YY1 SOX5 TAF1 IKZF1 ATF2 ZNF652 TCF12 POLI MBD2 SNORA37 C18orf54 STARD6 ENSG00000264296 MG828559 HSALNG0121638 ENSG00000277324
GH18J054259 Enhancer 1 FANTOM5 ENCODE 12.3 -38.8 -38794 3.5 SP1 BCL11A ZNF217 VEZF1 IRF4 CTBP1 BHLHE40 BATF SMARCE1 FOXA1 lnc-POLI-1 POLI MBD2 SNORA37 C18orf54 HSALNG0121641 ENSG00000277324
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA37 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORA37 gene promoter:
  • AP-1
  • c-Myb
  • GATA-3
  • p53
  • Pax-2
  • Pax-2a
  • S8
  • Sp1
  • YY1

Genomic Locations for SNORA37 Gene

Latest Assembly
chr18:54,222,284-54,222,412
(GRCh38/hg38)
Size:
129 bases
Orientation:
Minus strand

Previous Assembly
chr18:51,748,654-51,748,782
(GRCh37/hg19 by Entrez Gene)
Size:
129 bases
Orientation:
Minus strand

chr18:51,748,654-51,748,782
(GRCh37/hg19 by Ensembl)
Size:
129 bases
Orientation:
Minus strand

Genomic View for SNORA37 Gene

Genes around SNORA37 on UCSC Golden Path with GeneCards custom track
SNORA37 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNORA37 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA37 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA37 Gene

Proteins for SNORA37 Gene

Post-translational modifications for SNORA37 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA37 Gene

Domains & Families for SNORA37 Gene

Gene Families for SNORA37 Gene

genes like me logo Genes that share domains with SNORA37: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA37 Gene

Function for SNORA37 Gene

Phenotypes From GWAS Catalog for SNORA37 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA37 Gene

Localization for SNORA37 Gene

Gene Ontology (GO) - Cellular Components for SNORA37 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA37: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA37 Gene

Pathways & Interactions for SNORA37 Gene

PathCards logo

SuperPathways for SNORA37 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA37 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA37: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA37 Gene

Drugs & Compounds for SNORA37 Gene

No Compound Related Data Available

Transcripts for SNORA37 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA37 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000037D7AE_9606 snoRNA 129 6

RefSeq: NR_002970,

Ensembl: ENST00000384504 (view in UCSC) ,

Rfam: RF00415,

snoDB: SNODB143,

snOPY: Homo_sapiens300469,

ENA: AJ609444.1:1..129:ncRNA,

URS0001BBFB7A_9606 snoRNA 129 1

Rfam: RF00415,

SNORA37 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNORA37 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA37 Gene

No ASD Table

Relevant External Links for SNORA37 Gene

GeneLoc Exon Structure for
SNORA37

Expression for SNORA37 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA37 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA37

SOURCE GeneReport for Unigene cluster for SNORA37 Gene:

Hs.655869
genes like me logo Genes that share expression patterns with SNORA37: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA37 Gene

Orthologs for SNORA37 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA37 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA30 31
  • 100 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Snora30 31
  • 82 (a)
ManyToMany
Cow
(Bos Taurus)
Mammalia SNORA30 31
  • 80 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia SNORA30 31
  • 67 (a)
ManyToMany
Lizard
(Anolis carolinensis)
Reptilia SNORA30 31
  • 54 (a)
OneToMany
Zebrafish
(Danio rerio)
Actinopterygii SNORA30 31 31 31 31
  • 53 (a)
ManyToMany
Species where no ortholog for SNORA37 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORA37 Gene

ENSEMBL:
Gene Tree for SNORA37 (if available)
TreeFam:
Gene Tree for SNORA37 (if available)

Paralogs for SNORA37 Gene

No data available for Paralogs for SNORA37 Gene

Variants for SNORA37 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNORA37 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for SNORA37 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA37

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA37 Gene

Disorders for SNORA37 Gene

Additional Disease Information for SNORA37

No disorders were found for SNORA37 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA37 Gene

Publications for SNORA37 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORA37 Gene

Sources for SNORA37 Gene