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Aliases for SNORA36C Gene

Subcategory (RNA class) for SNORA36C Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA36C Gene

  • Small Nucleolar RNA, H/ACA Box 36C 2 3 5
  • Small Nucleolar RNA, H/ACA Box 36C (Retrotransposed) 2

External Ids for SNORA36C Gene

ORGUL Members for SNORA36C Gene

Previous GeneCards Identifiers for SNORA36C Gene

  • GC02U901162
  • GC02M069601
  • GC02M069747
  • GC02M069483
  • GC02M069522

Summaries for SNORA36C Gene

GeneCards Summary for SNORA36C Gene

SNORA36C (Small Nucleolar RNA, H/ACA Box 36C) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA36C Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA36C Gene

Genomics for SNORA36C Gene

GeneHancer (GH) Regulatory Elements for SNORA36C Gene

Promoters and enhancers for SNORA36C Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I069518 Enhancer 0.4 ENCODE 550.8 +1.2 1180 0.3 ATF7 ATF2 GC02M069523 GC02M069527 SNORA36C RN7SL604P AAK1
GH02I069483 Enhancer 0.8 ENCODE dbSUPER 10.8 +36.3 36254 1 ELF3 SOX5 FOXA2 NFIA FOXA3 REST PPARG SP1 HNF1A PRDM6 SNORA36C GFPT1 ANXA4 GC02M069470 RN7SL604P AAK1
GH02I069500 Enhancer 0.7 ENCODE 12.2 +20.0 20020 0.2 ELF3 FOXA2 SAP130 RARA ZNF366 ATF7 HOMEZ GATAD2A SOX5 FOXA3 SNORA36C ANXA4 RN7SL604P GC02M069470 AAK1
GH02I069487 Enhancer 0.5 dbSUPER 12.2 +28.5 28450 7.9 CTCF ZNF146 TCF7 RUNX3 CHD2 EGR2 GFPT1 SNORA36C ANXA4 NFU1 AAK1 GC02M069470 RN7SL604P
GH02I069499 Enhancer 0.4 Ensembl 12.2 +20.9 20873 0.2 IKZF1 EBF1 SPI1 SNORA36C ANXA4 RN7SL604P GC02M069470 AAK1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA36C on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA36C gene promoter:

Genomic Locations for SNORA36C Gene

Genomic Locations for SNORA36C Gene
chr2:69,520,043-69,520,174
(GRCh38/hg38)
Size:
132 bases
Orientation:
Minus strand
chr2:69,747,175-69,747,306
(GRCh37/hg19)

Genomic View for SNORA36C Gene

Genes around SNORA36C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA36C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA36C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA36C Gene

Proteins for SNORA36C Gene

Post-translational modifications for SNORA36C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA36C Gene

Domains & Families for SNORA36C Gene

Gene Families for SNORA36C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA36C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA36C Gene

Function for SNORA36C Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA36C Gene

Localization for SNORA36C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA36C Gene

Pathways & Interactions for SNORA36C Gene

SuperPathways for SNORA36C Gene

No Data Available

Interacting Proteins for SNORA36C Gene

Gene Ontology (GO) - Biological Process for SNORA36C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA36C Gene

Drugs & Compounds for SNORA36C Gene

No Compound Related Data Available

Transcripts for SNORA36C Gene

mRNA/cDNA for SNORA36C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA36C Gene

No ASD Table

Relevant External Links for SNORA36C Gene

GeneLoc Exon Structure for
SNORA36C
ECgene alternative splicing isoforms for
SNORA36C

Expression for SNORA36C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA36C Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA36C Gene:

SNORA36C

SOURCE GeneReport for Unigene cluster for SNORA36C Gene:

Hs.693447
genes like me logo Genes that share expression patterns with SNORA36C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA36C Gene

Orthologs for SNORA36C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA36C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA36 34
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25136 34
  • 77 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA36 34
  • 74 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA36 34 34
  • 72 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA36 34
  • 68 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA36 34
  • 71 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA36 34
  • 61 (a)
OneToMany
Species where no ortholog for SNORA36C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA36C Gene

ENSEMBL:
Gene Tree for SNORA36C (if available)
TreeFam:
Gene Tree for SNORA36C (if available)

Paralogs for SNORA36C Gene

No data available for Paralogs for SNORA36C Gene

Variants for SNORA36C Gene

Sequence variations from dbSNP and Humsavar for SNORA36C Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000073201 -- 69,520,526(-) T/C upstream_transcript_variant
rs1000609431 -- 69,521,551(-) T/C upstream_transcript_variant
rs1003051054 -- 69,520,692(-) T/C upstream_transcript_variant
rs1003167132 -- 69,521,129(-) C/T upstream_transcript_variant
rs1003851728 -- 69,521,470(-) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA36C Gene

Variant ID Type Subtype PubMed ID
nsv834253 CNV loss 17160897
esv33940 CNV loss 17666407

Additional Variant Information for SNORA36C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA36C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA36C Gene

Disorders for SNORA36C Gene

Additional Disease Information for SNORA36C

No disorders were found for SNORA36C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA36C Gene

Publications for SNORA36C Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  2. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang JH … Qu LH (Nucleic acids research 2006) 3 58

Products for SNORA36C Gene

Sources for SNORA36C Gene

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