Aliases for SNORA36B Gene

Subcategory (RNA class) for SNORA36B Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for SNORA36B Gene

  • Small Nucleolar RNA, H/ACA Box 36B 2 3 5
  • SNORA36B 2 5 170
  • ACA36b 2 3
  • SNODB649 177
  • RF00340 168

External Ids for SNORA36B Gene

Previous GeneCards Identifiers for SNORA36B Gene

  • GC01U901435
  • GC01P218440
  • GC01M220374
  • GC01M220377

Summaries for SNORA36B Gene

GeneCards Summary for SNORA36B Gene

SNORA36B (Small Nucleolar RNA, H/ACA Box 36B) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA36B Gene

  • Small nucleolar RNA SNORA36 family

Additional gene information for SNORA36B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA36B Gene

Genomics for SNORA36B Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA36B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J220200 Enhancer 0.3 Ensembl 600.7 +0.5 475 0.4 POLR2A SUPT5H MIR664A SNORA36B RAB3GAP2 EPRS1 lnc-BPNT1-1 lnc-BPNT1-2 IARS2
GH01J220198 Enhancer 0.2 Ensembl 600.7 +1.9 1875 0.8 MIR664A SNORA36B RAB3GAP2 lnc-BPNT1-1 lnc-BPNT1-2 IARS2
GH01J220199 Enhancer 0.2 Ensembl 600.7 +1.0 975 0.2 MIR664A SNORA36B RAB3GAP2 lnc-BPNT1-1 lnc-BPNT1-2 IARS2
GH01J220218 Enhancer 1.3 FANTOM5 Ensembl ENCODE 10.7 -22.4 -22443 9 SP1 CTCF IKZF1 POLR2A BACH1 FOXA1 LARP7 RELA PKNOX1 ZNF24 RAB3GAP2 EPRS1 SNORA36B C1orf115 BPNT1 ENSG00000272823 ENSG00000270708 lnc-IARS2-3 piR-52368-011 lnc-BPNT1-2
GH01J220228 Enhancer 0.2 Ensembl 10.4 -27.6 -27625 0.2 RAB3GAP2 SNORA36B EPRS1 ENSG00000270708 lnc-IARS2-3 piR-52368-011 lnc-BPNT1-2 IARS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA36B on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORA36B gene promoter:
  • AML1a
  • c-Myc
  • En-1
  • Hlf
  • Max1
  • MRF-2
  • NF-1
  • NF-1/L
  • Nkx3-1
  • Nkx3-1 v1

Genomic Locations for SNORA36B Gene

Genomic Locations for SNORA36B Gene
chr1:220,200,546-220,200,676
(GRCh38/hg38)
Size:
131 bases
Orientation:
Minus strand
chr1:220,373,888-220,374,018
(GRCh37/hg19)
Size:
131 bases
Orientation:
Minus strand

Genomic View for SNORA36B Gene

Genes around SNORA36B on UCSC Golden Path with GeneCards custom track
SNORA36B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORA36B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA36B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA36B Gene

Proteins for SNORA36B Gene

Post-translational modifications for SNORA36B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA36B Gene

Domains & Families for SNORA36B Gene

Gene Families for SNORA36B Gene

genes like me logo Genes that share domains with SNORA36B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA36B Gene

Function for SNORA36B Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA36B Gene

Localization for SNORA36B Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA36B gene
Compartment Confidence
nucleus 1

Gene Ontology (GO) - Cellular Components for SNORA36B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA36B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORA36B Gene

Pathways & Interactions for SNORA36B Gene

PathCards logo

SuperPathways for SNORA36B Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA36B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA36B: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA36B Gene

Drugs & Compounds for SNORA36B Gene

No Compound Related Data Available

Transcripts for SNORA36B Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA36B Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000068A4EE_9606 snoRNA 131 6

HGNC: 32629,

RefSeq: NR_002994,

Ensembl: ENST00000410438 (view in UCSC) ,

Rfam: RF00340,

snoDB: SNODB649,

snOPY: Homo_sapiens300767,

SNORA36B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA36B Gene

No ASD Table

Relevant External Links for SNORA36B Gene

GeneLoc Exon Structure for
SNORA36B

No data available for mRNA/cDNA for SNORA36B Gene

Expression for SNORA36B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA36B Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA36B

SOURCE GeneReport for Unigene cluster for SNORA36B Gene:

Hs.730572
genes like me logo Genes that share expression patterns with SNORA36B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA36B Gene

Orthologs for SNORA36B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA36B Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA36 31
  • 100 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORA36 31
  • 91 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORA36 31
  • 89 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Snora36b 31
  • 88 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia SNORA36 31
  • 78 (a)
OneToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORA36 31 31
  • 74 (a)
ManyToMany
Chicken
(Gallus gallus)
Aves SNORA36 31
  • 63 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia SNORA36 31
  • 69 (a)
OneToMany
Zebrafish
(Danio rerio)
Actinopterygii SNORA36 31
  • 63 (a)
OneToMany
Species where no ortholog for SNORA36B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORA36B Gene

ENSEMBL:
Gene Tree for SNORA36B (if available)
TreeFam:
Gene Tree for SNORA36B (if available)

Paralogs for SNORA36B Gene

No data available for Paralogs for SNORA36B Gene

Variants for SNORA36B Gene

Additional dbSNP identifiers (rs#s) for SNORA36B Gene

Additional Variant Information for SNORA36B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA36B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA36B Gene

Disorders for SNORA36B Gene

Additional Disease Information for SNORA36B

No disorders were found for SNORA36B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA36B Gene

Publications for SNORA36B Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORA36B Gene

Sources for SNORA36B Gene