Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORA33 Gene

Subcategory (RNA class) for SNORA33 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA33 Gene

  • Small Nucleolar RNA, H/ACA Box 33 2 3 5
  • ACA33 Small Nucleolar RNA 3
  • ACA33 SnoRNA 3
  • ACA33 3

External Ids for SNORA33 Gene

Previous GeneCards Identifiers for SNORA33 Gene

  • GC06P133184
  • GC06P130713

Summaries for SNORA33 Gene

GeneCards Summary for SNORA33 Gene

SNORA33 (Small Nucleolar RNA, H/ACA Box 33) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA33 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA33 Gene

Genomics for SNORA33 Gene

GeneHancer (GH) Regulatory Elements for SNORA33 Gene

Promoters and enhancers for SNORA33 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I132819 Enhancer 0.6 ENCODE 550.8 +2.0 1968 0.2 PAF1 ZBED1 HMG20A ZNF48 SSRP1 POLR2B KLF16 POLR2A NFATC1 MYNN GC06P132822 SNORA33 GC06P132819 SLC18B1 HMGB1P13
GH06I132812 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 25.2 -2.6 -2638 4.9 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 RPS12 SNORD101 GC06P132818 SNORA33 SLC18B1 VNN1 SNORD100 PIR38370 GC06P132821
GH06I132510 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.2 -304.5 -304463 4.4 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 STX7 MED23 SNORA33 LOC100421775 ENPP1 VNN2 VNN1 MOXD1
GH06I132797 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.9 -18.5 -18469 2.7 HDGF SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF143 SLC18B1 SNORA33 VNN2 GC06M132772
GH06I132400 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 10.6 -416.1 -416065 2.2 PKNOX1 MZF1 FEZF1 ZNF2 ZNF335 GLIS2 ZNF366 EGR2 ZNF202 REST MOXD1 MED23 SNORA33 PIR45153
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA33 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA33 gene promoter:

Genomic Locations for SNORA33 Gene

Genomic Locations for SNORA33 Gene
chr6:132,817,219-132,817,351
(GRCh38/hg38)
Size:
133 bases
Orientation:
Plus strand
chr6:133,138,358-133,138,490
(GRCh37/hg19)

Genomic View for SNORA33 Gene

Genes around SNORA33 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA33 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA33 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA33 Gene

Proteins for SNORA33 Gene

Post-translational modifications for SNORA33 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA33 Gene

Domains & Families for SNORA33 Gene

Gene Families for SNORA33 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA33: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA33 Gene

Function for SNORA33 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA33 Gene

Localization for SNORA33 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA33 Gene

Pathways & Interactions for SNORA33 Gene

SuperPathways for SNORA33 Gene

No Data Available

Interacting Proteins for SNORA33 Gene

Gene Ontology (GO) - Biological Process for SNORA33 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA33 Gene

Drugs & Compounds for SNORA33 Gene

No Compound Related Data Available

Transcripts for SNORA33 Gene

mRNA/cDNA for SNORA33 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA33 Gene

Small nucleolar RNA, H/ACA box 33:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA33 Gene

No ASD Table

Relevant External Links for SNORA33 Gene

GeneLoc Exon Structure for
SNORA33
ECgene alternative splicing isoforms for
SNORA33

Expression for SNORA33 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA33 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA33 Gene:

SNORA33

SOURCE GeneReport for Unigene cluster for SNORA33 Gene:

Hs.671378
genes like me logo Genes that share expression patterns with SNORA33: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA33 Gene

Orthologs for SNORA33 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA33 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA33 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA33 34
  • 86 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA33 34
  • 86 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Snora33 34
  • 78 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA33 34
  • 70 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA33 34
  • 61 (a)
OneToMany
Species where no ortholog for SNORA33 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA33 Gene

ENSEMBL:
Gene Tree for SNORA33 (if available)
TreeFam:
Gene Tree for SNORA33 (if available)

Paralogs for SNORA33 Gene

No data available for Paralogs for SNORA33 Gene

Variants for SNORA33 Gene

Sequence variations from dbSNP and Humsavar for SNORA33 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1003704262 -- 132,817,514(+) T/C downstream_transcript_variant
rs1004662688 -- 132,816,307(+) T/C upstream_transcript_variant
rs1005713289 -- 132,815,542(+) C/T upstream_transcript_variant
rs1005715320 -- 132,816,953(+) C/A/T upstream_transcript_variant
rs1008170858 -- 132,815,757(+) T/A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA33 Gene

Variant ID Type Subtype PubMed ID
dgv1830e212 CNV loss 25503493
nsv970167 CNV duplication 23825009

Additional Variant Information for SNORA33 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA33

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA33 Gene

Disorders for SNORA33 Gene

Additional Disease Information for SNORA33

No disorders were found for SNORA33 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA33 Gene

Publications for SNORA33 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 58
  4. A genome-wide association study for diabetic nephropathy genes in African Americans. (PMID: 21150874) McDonough CW … Bowden DW (Kidney international 2011) 44 58
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORA33 Gene

Sources for SNORA33 Gene

Content
Loading form....