Aliases for SNORA31 Gene

Subcategory (RNA class) for SNORA31 Gene

snoRNA

Number of RNA Genes sources:

3 / 14

Aliases for SNORA31 Gene

  • Small Nucleolar RNA, H/ACA Box 31 2 3 5
  • SNORA31 2 174
  • ACA31 SnoRNA 3
  • SNORA31A 3
  • RF00322 172
  • ACA31 3

External Ids for SNORA31 Gene

Previous GeneCards Identifiers for SNORA31 Gene

  • GC13M044813
  • GC13M044816
  • GC13M044819
  • GC13M044822
  • GC13M044825
  • GC13M044828
  • GC13M044831
  • GC13M045913
  • GC13M045915
  • GC13M026713
  • GC13M045918
  • GC13M045922
  • GC13M045927
  • GC13M045931
  • GC13M045941
  • GC13M045957
  • GC13M045977

Summaries for SNORA31 Gene

GeneCards Summary for SNORA31 Gene

SNORA31 (Small Nucleolar RNA, H/ACA Box 31) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORA31 include Tricuspid Atresia and Herpes Simplex Encephalitis.

Rfam classification for SNORA31 Gene

  • Small nucleolar RNA SNORA31

Additional gene information for SNORA31 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA31 Gene

Genomics for SNORA31 Gene

GeneHancer (GH) Regulatory Elements for SNORA31 Gene

Promoters and enhancers for SNORA31 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J045339 Promoter 0.5 Ensembl 500.7 +0.4 408 0.4 POLR2A RBFOX2 SNORA31 SNORA31B piR-33864 TPT1-AS1 TPT1 lnc-SLC25A30-4
GH13J045337 Enhancer 0.3 ENCODE 500.7 -0.4 -412 0.2 POLR2A RBFOX2 SNORA31 SNORA31B piR-33864 ENSG00000273149 TPT1 lnc-SLC25A30-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA31 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA31 gene promoter:
  • AP-2alpha
  • AP-2alphaA
  • AP-2beta
  • CREB
  • deltaCREB
  • p53

Genomic Locations for SNORA31 Gene

Genomic Locations for SNORA31 Gene
chr13:45,337,480-45,337,609
(GRCh38/hg38)
Size:
130 bases
Orientation:
Minus strand
chr13:45,911,615-45,911,744
(GRCh37/hg19)
Size:
130 bases
Orientation:
Minus strand

Genomic View for SNORA31 Gene

Genes around SNORA31 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA31 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA31 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA31 Gene

Proteins for SNORA31 Gene

Post-translational modifications for SNORA31 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA31 Gene

Domains & Families for SNORA31 Gene

Gene Families for SNORA31 Gene

genes like me logo Genes that share domains with SNORA31: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA31 Gene

Function for SNORA31 Gene

Phenotypes From GWAS Catalog for SNORA31 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA31 Gene

Localization for SNORA31 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA31 gene
Compartment Confidence
extracellular 1
mitochondrion 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA31 Gene

Pathways & Interactions for SNORA31 Gene

PathCards logo

SuperPathways for SNORA31 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNORA31 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA31 Gene

Drugs & Compounds for SNORA31 Gene

No Compound Related Data Available

Transcripts for SNORA31 Gene

mRNA/cDNA for SNORA31 Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 ENA transcripts :
1 Rfam transcripts :
1 snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA31 Gene

No ASD Table

Relevant External Links for SNORA31 Gene

GeneLoc Exon Structure for
SNORA31

Expression for SNORA31 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA31 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA31

genes like me logo Genes that share expression patterns with SNORA31: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA31 Gene

Orthologs for SNORA31 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA31 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA31 31
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA31 31
  • 92 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia SNORA31 31
  • 86 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA31 31 31
  • 79 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm25011 31
  • 67 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA31 31
  • 79 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA31 31
  • 59 (a)
OneToMany
Species where no ortholog for SNORA31 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA31 Gene

ENSEMBL:
Gene Tree for SNORA31 (if available)
TreeFam:
Gene Tree for SNORA31 (if available)

Paralogs for SNORA31 Gene

No data available for Paralogs for SNORA31 Gene

Variants for SNORA31 Gene

Additional dbSNP identifiers (rs#s) for SNORA31 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA31 Gene

Variant ID Type Subtype PubMed ID
nsv1046200 CNV gain 25217958
nsv510579 CNV deletion 20534489
nsv951078 CNV duplication 24416366
nsv983582 CNV duplication 23825009

Additional Variant Information for SNORA31 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA31

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA31 Gene

Disorders for SNORA31 Gene

MalaCards: The human disease database

(3) MalaCards diseases for SNORA31 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
tricuspid atresia
  • congenital agenesis of the tricuspid valve
herpes simplex encephalitis
  • herpes simplex meningo-encephalitis
diarrhea 2, with microvillus atrophy
  • diar2
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORA31

genes like me logo Genes that share disorders with SNORA31: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORA31 Gene

Publications for SNORA31 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 54
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 54
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 54
  4. Human SNORA31 variations impair cortical neuron-intrinsic immunity to HSV-1 and underlie herpes simplex encephalitis. (PMID: 31806906) Lafaille FG … Zhang SY (Nature medicine 2019) 3

Products for SNORA31 Gene

Sources for SNORA31 Gene