SNORA30 Gene (RNA Gene)

Small Nucleolar RNA, H/ACA Box 30

GC16P030716
GIFtS:
17
See more...

Aliases for SNORA30 Gene

Subcategory (RNA class) for SNORA30 Gene

snoRNA

Number of RNA Genes sources:

4 / 17

Aliases for SNORA30 Gene

  • Small Nucleolar RNA, H/ACA Box 30 2 3 5
  • SNORA30 2 5 170
  • SNORA30A 2 3
  • ACA30 2 3
  • ACA30 SnoRNA 3
  • RF00415 168
  • SNODB76 177

External Ids for SNORA30 Gene

Previous GeneCards Identifiers for SNORA30 Gene

  • GC16P030631
  • GC16P030721
  • GC16P028284

Summaries for SNORA30 Gene

GeneCards Summary for SNORA30 Gene

SNORA30 (Small Nucleolar RNA, H/ACA Box 30) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORA30 include Melanoma-Astrocytoma Syndrome and Diarrhea 2, With Microvillus Atrophy.

Rfam classification for SNORA30 Gene

  • Small nucleolar RNA SNORA30/SNORA37 family

Additional gene information for SNORA30 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA30 Gene

Genomics for SNORA30 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SNORA30 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J030760 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 11.3 +51.6 51564 4.2 CEBPG SP1 CREB1 GATAD2A PRDM10 ZNF629 TFE3 RFX1 IKZF1 ZNF692 CCDC189 RNF40 lnc-ZNF629-2 piR-51631 SRCAP ZNF747 FUS SETD1A BCL7C KAT8
GH16J030774 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas 11.1 +66.6 66553 5.5 ZNF221 ARHGAP35 HNRNPL CREB1 GATAD2A ZBTB33 ATF7 PRDM10 ZNF629 TFE3 ENSG00000280211 lnc-RNF40-1 lnc-ZNF629-1 SRCAP ZNF785 SETD1A ZNF720 NPIPB13 ZNF764 KAT8
GH16J030739 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 12.3 +30.5 30531 3.3 CEBPG ATF7 PRDM10 ZNF629 RFX1 ZNF692 POLR2A PRDM1 PATZ1 REST ENSG00000260899 TMEM265 SNORA30 SRCAP PHKG2 ENSG00000282034
GH16J030805 Promoter/Enhancer 1.6 ENCODE CraniofacialAtlas 10.8 +95.8 95780 2.6 ZNF221 SP1 HNRNPL CREB1 GATAD2A ZBTB33 PRDM10 ZNF629 TFE3 SIX5 lnc-RNF40-4 SRCAP SETD1A INO80E RNF40 FUS ZNF764 ZNF720 RUSF1 FBRS
GH16J030939 Promoter/Enhancer 1.2 Ensembl ENCODE 10.3 +231.0 230999 3.6 GATAD2A CTCF JUND ZNF143 ZIC2 RBFOX2 PKNOX1 PATZ1 REST RAD21 piR-41306-103 HSD3B7 ZNF668 TGFB1I1 KAT8 SETD1A ZNF646 MIR762 BCL7C CTF1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA30 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORA30 gene promoter:
  • AML1a
  • c-Myb
  • C/EBPalpha
  • CHOP-10
  • Evi-1
  • HEN1
  • RORalpha2
  • YY1

Genomic Locations for SNORA30 Gene

Genomic Locations for SNORA30 Gene
chr16:30,710,537-30,710,665
(GRCh38/hg38)
Size:
129 bases
Orientation:
Plus strand
chr16:30,721,858-30,721,986
(GRCh37/hg19)
Size:
129 bases
Orientation:
Plus strand

Genomic View for SNORA30 Gene

Genes around SNORA30 on UCSC Golden Path with GeneCards custom track
SNORA30 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORA30 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA30 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORA30 Gene

Proteins for SNORA30 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORA30 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA30 Gene

Domains & Families for SNORA30 Gene

Gene Families for SNORA30 Gene

HGNC:
genes like me logo Genes that share domains with SNORA30: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA30 Gene

Function for SNORA30 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SNORA30 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA30 Gene

Localization for SNORA30 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA30 gene
Compartment Confidence
nucleus 1

Gene Ontology (GO) - Cellular Components for SNORA30 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA30: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORA30 Gene

Pathways & Interactions for SNORA30 Gene

PathCards logo

SuperPathways for SNORA30 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA30 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA30: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA30 Gene

Drugs & Compounds for SNORA30 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORA30 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA30 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000022C1CA_9606 snoRNA 129 7

HGNC: 32620,

RefSeq: NR_002966,

Ensembl: ENST00000384028 (view in UCSC) ,

Rfam: RF00415,

snoDB: SNODB76,

snOPY: Homo_sapiens300587,

ENA: AJ609440.1:1..129:ncRNA,

SNORA30 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNORA30 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA30 Gene

No ASD Table

Relevant External Links for SNORA30 Gene

GeneLoc Exon Structure for
SNORA30

Expression for SNORA30 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA30 Gene

mRNA expression in normal human tissues for SNORA30 Gene
mRNA expression by GTEx for SNORA30 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA30

SOURCE GeneReport for Unigene cluster for SNORA30 Gene:

Hs.689718
genes like me logo Genes that share expression patterns with SNORA30: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA30 Gene

Orthologs for SNORA30 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA30 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia SNORA30 31
  • 98 (a)
 OneToOne
Dog
(Canis familiaris)
 Mammalia SNORA30 31
  • 89 (a)
 OneToOne
Mouse
(Mus musculus)
 Mammalia Snora30 31
  • 85 (a)
 ManyToMany
Cow
(Bos Taurus)
 Mammalia SNORA30 31
  • 82 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia SNORA30 31
  • 73 (a)
 OneToOne
Oppossum
(Monodelphis domestica)
 Mammalia SNORA30 31 31
  • 71 (a)
 OneToMany
Lizard
(Anolis carolinensis)
 Reptilia SNORA30 31
  • 53 (a)
 OneToMany
Zebrafish
(Danio rerio)
 Actinopterygii SNORA30 31 31 31 31
  • 53 (a)
 ManyToMany
Species where no ortholog for SNORA30 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORA30 Gene

ENSEMBL:
Gene Tree for SNORA30 (if available)
TreeFam:
Gene Tree for SNORA30 (if available)

Paralogs for SNORA30 Gene

No data available for Paralogs for SNORA30 Gene

Variants for SNORA30 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for SNORA30 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA30 Gene

Variant ID Type Subtype PubMed ID
nsv469724 CNV loss 16826518
nsv833188 CNV loss 17160897

Additional Variant Information for SNORA30 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA30

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA30 Gene

Disorders for SNORA30 Gene

MalaCards: The human disease database

(2) MalaCards diseases for SNORA30 Gene - From: DISEASES

Disorder Aliases PubMed IDs
melanoma-astrocytoma syndrome
  • melanoma and neural system tumor syndrome
diarrhea 2, with microvillus atrophy
  • diar2
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORA30

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with SNORA30: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORA30 Gene

Publications for SNORA30 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

ExternalLinks

View latest publications for SNORA30 gene in Mastermind

Products for SNORA30 Gene

Sources for SNORA30 Gene