Aliases for SNORA2A Gene

Subcategory (RNA class) for SNORA2A Gene

snoRNA

Number of RNA Genes sources:

3 / 14

Aliases for SNORA2A Gene

  • Small Nucleolar RNA, H/ACA Box 2A 2 3 5
  • SNORA2A 2 174
  • ACA2a SnoRNA 3
  • RF00410 172
  • ACA2A 3

External Ids for SNORA2A Gene

Previous GeneCards Identifiers for SNORA2A Gene

  • GC12M047340
  • GC12M049051
  • GC12M046084
  • GC12M049055
  • GC12M049060
  • GC12M049068
  • GC12M049078
  • GC12M049091

Summaries for SNORA2A Gene

GeneCards Summary for SNORA2A Gene

SNORA2A (Small Nucleolar RNA, H/ACA Box 2A) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA2A Gene

  • Small nucleolar RNA SNORA2/SNORA34 family

Additional gene information for SNORA2A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA2A Gene

Genomics for SNORA2A Gene

GeneHancer (GH) Regulatory Elements for SNORA2A Gene


Top Transcription factor binding sites by QIAGEN in the SNORA2A gene promoter:
  • AML1a
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • GR
  • GR-alpha
  • GR-beta

Genomic Locations for SNORA2A Gene

Genomic Locations for SNORA2A Gene
chr12:48,656,648-48,656,782
(GRCh38/hg38)
Size:
135 bases
Orientation:
Minus strand
chr12:49,050,431-49,050,565
(GRCh37/hg19)
Size:
135 bases
Orientation:
Minus strand

Genomic View for SNORA2A Gene

Genes around SNORA2A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA2A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA2A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA2A Gene

Proteins for SNORA2A Gene

Post-translational modifications for SNORA2A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA2A Gene

Domains & Families for SNORA2A Gene

Gene Families for SNORA2A Gene

genes like me logo Genes that share domains with SNORA2A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA2A Gene

Function for SNORA2A Gene

Phenotypes From GWAS Catalog for SNORA2A Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA2A Gene

Localization for SNORA2A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA2A Gene

Pathways & Interactions for SNORA2A Gene

PathCards logo

SuperPathways for SNORA2A Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNORA2A Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA2A Gene

Drugs & Compounds for SNORA2A Gene

No Compound Related Data Available

Transcripts for SNORA2A Gene

mRNA/cDNA for SNORA2A Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 ENA transcripts :
1 Rfam transcripts :
1 snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA2A Gene

No ASD Table

Relevant External Links for SNORA2A Gene

GeneLoc Exon Structure for
SNORA2A

Expression for SNORA2A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA2A Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA2A

SOURCE GeneReport for Unigene cluster for SNORA2A Gene:

Hs.689723
genes like me logo Genes that share expression patterns with SNORA2A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA2A Gene

Orthologs for SNORA2A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA2A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA2 31
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA2 31 31
  • 86 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA2 31 31
  • 82 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA2 31 31
  • 81 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA2 31
  • 71 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm22683 31
  • 69 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA2 31
  • 63 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA2 31
  • 73 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA2 31
  • 64 (a)
OneToMany
Species where no ortholog for SNORA2A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA2A Gene

ENSEMBL:
Gene Tree for SNORA2A (if available)
TreeFam:
Gene Tree for SNORA2A (if available)

Paralogs for SNORA2A Gene

No data available for Paralogs for SNORA2A Gene

Variants for SNORA2A Gene

Additional dbSNP identifiers (rs#s) for SNORA2A Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA2A Gene

Variant ID Type Subtype PubMed ID
dgv1496n100 CNV gain 25217958

Additional Variant Information for SNORA2A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA2A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA2A Gene

Disorders for SNORA2A Gene

Additional Disease Information for SNORA2A

No disorders were found for SNORA2A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA2A Gene

Publications for SNORA2A Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 54
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 54
  3. Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles. (PMID: 25187353) Goldstein JI … Sullivan PF (Nature communications 2014) 3 54
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 54

Products for SNORA2A Gene

Sources for SNORA2A Gene