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Aliases for SNORA29 Gene

Subcategory (RNA class) for SNORA29 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA29 Gene

  • Small Nucleolar RNA, H/ACA Box 29 2 3 5
  • ACA29 SnoRNA 3
  • ACA29 3

External Ids for SNORA29 Gene

Previous GeneCards Identifiers for SNORA29 Gene

  • GC06M160126
  • GC06M160206

Summaries for SNORA29 Gene

GeneCards Summary for SNORA29 Gene

SNORA29 (Small Nucleolar RNA, H/ACA Box 29) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA29 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA29 Gene

Genomics for SNORA29 Gene

GeneHancer (GH) Regulatory Elements for SNORA29 Gene

Promoters and enhancers for SNORA29 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I159725 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.5 +57.5 57469 5.4 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 WTAP GC06M159725 MRPL18 TCP1 PNLDC1 ACAT2 SOD2 SOD2-OT1 SNORA29 SNORA20
GH06I159690 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.3 +92.3 92334 5.8 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 SOD2 MRPL18 WTAP PNLDC1 SOD2-OT1 ACAT2 SNORA29 TCP1 SNORA20 LOC105378085
GH06I159699 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.6 +84.7 84749 3.5 ATF7 FOS KLF13 SP3 TSHZ1 REST ZNF623 ZNF518A MYNN STAT3 GC06M159698 MRPL18 WTAP PNLDC1 SOD2 SOD2-OT1 ACAT2 SNORA29 TCP1 GC06M159668
GH06I159819 Enhancer 0.8 Ensembl ENCODE 11.8 -34.7 -34711 2.1 CTBP1 PKNOX1 SAP130 L3MBTL2 POLR2A BHLHE40 MAX MYC MGA MRPL18 PNLDC1 TCP1 SNORA29 SNORA20 ACAT2 SOD2 SOD2-OT1 SLC22A1 IGF2R
GH06I160455 Enhancer 1 Ensembl ENCODE 9.4 -670.1 -670104 1.7 ELF3 RB1 ARID4B ZNF48 ZSCAN9 RAD21 ARID2 SCRT2 ZNF143 RUNX3 SLC22A3 SNORA29 TCP1 PIR50129 LPAL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA29 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA29 gene promoter:

Genomic Locations for SNORA29 Gene

Genomic Locations for SNORA29 Gene
chr6:159,785,594-159,785,733
(GRCh38/hg38)
Size:
140 bases
Orientation:
Minus strand
chr6:160,206,626-160,206,765
(GRCh37/hg19)

Genomic View for SNORA29 Gene

Genes around SNORA29 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA29 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA29 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA29 Gene

Proteins for SNORA29 Gene

Post-translational modifications for SNORA29 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA29 Gene

Domains & Families for SNORA29 Gene

Gene Families for SNORA29 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA29: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA29 Gene

Function for SNORA29 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA29 Gene

Localization for SNORA29 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA29 Gene

Pathways & Interactions for SNORA29 Gene

SuperPathways for SNORA29 Gene

No Data Available

Interacting Proteins for SNORA29 Gene

Gene Ontology (GO) - Biological Process for SNORA29 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA29 Gene

Drugs & Compounds for SNORA29 Gene

No Compound Related Data Available

Transcripts for SNORA29 Gene

mRNA/cDNA for SNORA29 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA29 Gene

No ASD Table

Relevant External Links for SNORA29 Gene

GeneLoc Exon Structure for
SNORA29
ECgene alternative splicing isoforms for
SNORA29

Expression for SNORA29 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA29 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA29 Gene:

SNORA29
genes like me logo Genes that share expression patterns with SNORA29: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA29 Gene

Orthologs for SNORA29 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA29 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA29 34
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA29 34
  • 90 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA29 34
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm26130 34
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA29 34
  • 74 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA29 34
  • 72 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA29 34
  • 66 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA29 34 34
  • 65 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA29 34 34
  • 57 (a)
OneToMany
Species where no ortholog for SNORA29 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA29 Gene

ENSEMBL:
Gene Tree for SNORA29 (if available)
TreeFam:
Gene Tree for SNORA29 (if available)

Paralogs for SNORA29 Gene

No data available for Paralogs for SNORA29 Gene

Variants for SNORA29 Gene

Sequence variations from dbSNP and Humsavar for SNORA29 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000196918 -- 159,786,139(-) G/A upstream_transcript_variant
rs1000332075 -- 159,786,281(-) C/G/T upstream_transcript_variant
rs1000545945 -- 159,785,160(-) ACTG/ downstream_transcript_variant
rs1000704230 -- 159,786,515(-) G/A upstream_transcript_variant
rs1005177897 -- 159,785,626(-) G/A/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA29 Gene

Variant ID Type Subtype PubMed ID
esv2759483 CNV gain 17122850
nsv5563 CNV insertion 18451855

Additional Variant Information for SNORA29 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA29

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA29 Gene

Disorders for SNORA29 Gene

Additional Disease Information for SNORA29

No disorders were found for SNORA29 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA29 Gene

Publications for SNORA29 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORA29 Gene

Sources for SNORA29 Gene

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