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Aliases for SNORA28 Gene
Subcategory (RNA class) for SNORA28 Gene
snoRNA
Number of RNA Genes sources:
4 / 17
Aliases for SNORA28 Gene
External Ids for SNORA28 Gene
- HGNC: 32618
- Entrez Gene: 677811
- Ensembl: ENSG00000272533
Previous GeneCards Identifiers for SNORA28 Gene
- GC14P102876
- GC14P103804
- GC14P083982
Summaries for SNORA28 Gene
GeneCards Summary for SNORA28 Gene
SNORA28 (Small Nucleolar RNA, H/ACA Box 28) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORA28 include Inflammatory Bowel Disease 26.
Rfam classification for SNORA28 Gene
-
Small nucleolar RNA SNORA28
Additional gene information for SNORA28 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA28 Gene
Genomics for SNORA28 Gene
GeneHancer (GH) Regulatory Elements Pubs
- Top Transcription factor binding sites by QIAGEN in the SNORA28 gene promoter:
-
- C/EBPalpha
- FOXJ2
- FOXJ2 (long isoform)
- GATA-1
- MIF-1
- Pax-6
- PPAR-gamma1
- PPAR-gamma2
- RORalpha1
Genomic Locations for SNORA28 Gene
Genomic Locations for SNORA28 Gene
- chr14:103,337,849-103,337,974
- (GRCh38/hg38)
- Size:
- 126 bases
- Orientation:
- Plus strand
- chr14:103,804,186-103,804,311
- (GRCh37/hg19)
- Size:
- 126 bases
- Orientation:
- Plus strand
Genomic View for SNORA28 Gene
Genes around SNORA28 on UCSC Golden Path with GeneCards custom track
SNORA28 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 14q32.32 by HGNC
- 14q32.32 by Entrez Gene
- 14q32.32 by Ensembl
SNORA28 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNORA28 Gene
Proteins for SNORA28 Gene
Post-translational modifications for SNORA28 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORA28
- Origene Custom Protein Services for SNORA28
No data available for DME Specific Peptides for SNORA28 Gene
Domains & Families for SNORA28 Gene
Gene Families for SNORA28 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA28 Gene
Function for SNORA28 Gene
Phenotypes From GWAS Catalog for SNORA28 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SNORA28 - Select products 50% OFF >
- * SNORA28 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for SNORA28
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for SNORA28 - Select products 50% OFF >
- * SNORA28 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA28 Gene
Localization for SNORA28 Gene
| Compartment | Confidence |
|---|---|
| endosome | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORA28 Gene
Pathways & Interactions for SNORA28 Gene
No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA28 Gene
Transcripts for SNORA28 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA28 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00000F8A5F_9606 | snoRNA | 126 | 7 |
HGNC: 32618, RefSeq: NR_002964, Ensembl: ENST00000606769 (view in UCSC) , Rfam: RF00400, snoDB: SNODB44, snOPY: Homo_sapiens300724, ENA: AJ609462.1:1..126:ncRNA, |
SNORA28 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for SNORA28 Gene
- 1 NCBI additional mRNA sequence :
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SNORA28 - Select products 50% OFF >
- * SNORA28 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for SNORA28
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for SNORA28 - Select products 50% OFF >
- * SNORA28 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
Relevant External Links for SNORA28 Gene
- GeneLoc Exon Structure for
- SNORA28
Expression for SNORA28 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA28
SOURCE GeneReport for Unigene cluster for SNORA28 Gene:
Hs.658237Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA28 Gene
Orthologs for SNORA28 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | SNORA28 31 |
|
OneToOne | |
| Mouse (Mus musculus) |
Mammalia | Snora28 31 |
|
OneToOne | |
| Cow (Bos Taurus) |
Mammalia | SNORA28 31 |
|
OneToOne | |
| Dog (Canis familiaris) |
Mammalia | SNORA28 31 31 31 |
|
OneToMany | |
| Oppossum (Monodelphis domestica) |
Mammalia | SNORA28 31 |
|
OneToOne | |
| Platypus (Ornithorhynchus anatinus) |
Mammalia | SNORA28 31 31 |
|
OneToMany | |
| Chicken (Gallus gallus) |
Aves | SNORA28 31 |
|
OneToOne | |
| Lizard (Anolis carolinensis) |
Reptilia | SNORA28 31 31 |
|
OneToMany |
- Species where no ortholog for SNORA28 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Rainbow Trout (Oncorhynchus mykiss)
- Rat (Rattus norvegicus)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Squirt (Ciona savignyi)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
- Zebrafish (Danio rerio)
Paralogs for SNORA28 Gene
No data available for Paralogs for SNORA28 Gene
Variants for SNORA28 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| nsv1054574 | CNV | loss | 25217958 |
| nsv9168 | CNV | loss | 18304495 |
Additional Variant Information for SNORA28 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORA28
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA28 Gene
Disorders for SNORA28 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| inflammatory bowel disease 26 |
|
|
Search SNORA28 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for SNORA28
No data available for UniProtKB/Swiss-Prot and Genatlas for SNORA28 Gene
Publications for SNORA28 Gene
- snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3
- Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3
- Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
ExternalLinks
Products for SNORA28 Gene
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Sources for SNORA28 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB