Free for academic non-profit institutions. Other users need a Commercial license

SNORA28 Gene(RNA Gene)

Small Nucleolar RNA, H/ACA Box 28

GCID:
GC14P103337
GIFtS:
15
Genes Participants
UDN Logo

Aliases for SNORA28 Gene

Subcategory (RNA class) for SNORA28 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA28 Gene

  • Small Nucleolar RNA, H/ACA Box 28 2 3 5
  • ACA28 SnoRNA 3
  • ACA28 3

External Ids for SNORA28 Gene

ORGUL Members for SNORA28 Gene

Previous GeneCards Identifiers for SNORA28 Gene

  • GC14P102876
  • GC14P103804
  • GC14P083982

Summaries for SNORA28 Gene

GeneCards Summary for SNORA28 Gene

SNORA28 (Small Nucleolar RNA, H/ACA Box 28) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA28 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA28 Gene

Genomics for SNORA28 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SNORA28 Gene


Top Transcription factor binding sites by QIAGEN in the SNORA28 gene promoter:

Genomic Locations for SNORA28 Gene

Genomic Locations for SNORA28 Gene
chr14:103,337,849-103,337,974
(GRCh38/hg38)
Size:
126 bases
Orientation:
Plus strand
chr14:103,804,186-103,804,311
(GRCh37/hg19)

Genomic View for SNORA28 Gene

Genes around SNORA28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA28 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORA28 Gene

Proteins for SNORA28 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORA28 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA28 Gene

Domains & Families for SNORA28 Gene

Gene Families for SNORA28 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA28: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA28 Gene

Function for SNORA28 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA28 Gene

Localization for SNORA28 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA28 Gene

Pathways & Interactions for SNORA28 Gene

SuperPathways for SNORA28 Gene

PathCards logo More details on SuperPathways for SNORA28
No Data Available

Interacting Proteins for SNORA28 Gene

Gene Ontology (GO) - Biological Process for SNORA28 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA28 Gene

Drugs & Compounds for SNORA28 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORA28 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORA28 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA28 Gene

Small nucleolar RNA, H/ACA box 28:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA28 Gene

No ASD Table

Relevant External Links for SNORA28 Gene

GeneLoc Exon Structure for
SNORA28
ECgene alternative splicing isoforms for
SNORA28

Expression for SNORA28 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA28 Gene

mRNA expression in normal human tissues for SNORA28 Gene
mRNA expression by GTEx for SNORA28 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA28 Gene:

SNORA28

SOURCE GeneReport for Unigene cluster for SNORA28 Gene:

Hs.658237
genes like me logo Genes that share expression patterns with SNORA28: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA28 Gene

Orthologs for SNORA28 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA28 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORA28 34
  • 100 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Snora28 34
  • 93 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia SNORA28 34
  • 92 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia SNORA28 34
  • 79 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia SNORA28 34 34
  • 76 (a)
 OneToMany
dog
(Canis familiaris)
 Mammalia SNORA28 34 34 34
  • 74 (a)
 OneToMany
chicken
(Gallus gallus)
 Aves SNORA28 34
  • 69 (a)
 OneToOne
lizard
(Anolis carolinensis)
 Reptilia SNORA28 34 34
  • 72 (a)
 OneToMany
Species where no ortholog for SNORA28 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA28 Gene

ENSEMBL:
Gene Tree for SNORA28 (if available)
TreeFam:
Gene Tree for SNORA28 (if available)

Paralogs for SNORA28 Gene

No data available for Paralogs for SNORA28 Gene

Variants for SNORA28 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for SNORA28 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1001182441 -- 103,337,266(+) A/G upstream_transcript_variant
rs1002202941 -- 103,338,109(+) C/G downstream_transcript_variant
rs1002889043 -- 103,336,238(+) C/T upstream_transcript_variant
rs1004024395 -- 103,338,426(+) C/G downstream_transcript_variant
rs1004618778 -- 103,337,670(+) T/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA28 Gene

Variant ID Type Subtype PubMed ID
nsv1054574 CNV loss 25217958
nsv9168 CNV loss 18304495

Additional Variant Information for SNORA28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA28 Gene

Disorders for SNORA28 Gene

Additional Disease Information for SNORA28

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORA28 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA28 Gene

Publications for SNORA28 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORA28 Gene

Sources for SNORA28 Gene

Content
Loading form....