Aliases for SNORA28 Gene

Subcategory (RNA class) for SNORA28 Gene

snoRNA

Number of RNA Genes sources:

4 / 17

Aliases for SNORA28 Gene

  • Small Nucleolar RNA, H/ACA Box 28 2 3 5
  • SNORA28 2 5 170
  • ACA28 2 3
  • ACA28 SnoRNA 3
  • RF00400 168
  • SNODB44 177

External Ids for SNORA28 Gene

Previous GeneCards Identifiers for SNORA28 Gene

  • GC14P102876
  • GC14P103804
  • GC14P083982

Summaries for SNORA28 Gene

GeneCards Summary for SNORA28 Gene

SNORA28 (Small Nucleolar RNA, H/ACA Box 28) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORA28 include Inflammatory Bowel Disease 26.

Rfam classification for SNORA28 Gene

  • Small nucleolar RNA SNORA28

Additional gene information for SNORA28 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA28 Gene

Genomics for SNORA28 Gene

GeneHancer (GH) Regulatory Elements Pubs


Top Transcription factor binding sites by QIAGEN in the SNORA28 gene promoter:
  • C/EBPalpha
  • FOXJ2
  • FOXJ2 (long isoform)
  • GATA-1
  • MIF-1
  • Pax-6
  • PPAR-gamma1
  • PPAR-gamma2
  • RORalpha1

Genomic Locations for SNORA28 Gene

Genomic Locations for SNORA28 Gene
chr14:103,337,849-103,337,974
(GRCh38/hg38)
Size:
126 bases
Orientation:
Plus strand
chr14:103,804,186-103,804,311
(GRCh37/hg19)
Size:
126 bases
Orientation:
Plus strand

Genomic View for SNORA28 Gene

Genes around SNORA28 on UCSC Golden Path with GeneCards custom track
SNORA28 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORA28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA28 Gene

Proteins for SNORA28 Gene

Post-translational modifications for SNORA28 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA28 Gene

Domains & Families for SNORA28 Gene

Gene Families for SNORA28 Gene

genes like me logo Genes that share domains with SNORA28: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA28 Gene

Function for SNORA28 Gene

Phenotypes From GWAS Catalog for SNORA28 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA28 Gene

Localization for SNORA28 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA28 gene
Compartment Confidence
endosome 1

Gene Ontology (GO) - Cellular Components for SNORA28 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA28: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORA28 Gene

Pathways & Interactions for SNORA28 Gene

PathCards logo

SuperPathways for SNORA28 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA28 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA28: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA28 Gene

Drugs & Compounds for SNORA28 Gene

No Compound Related Data Available

Transcripts for SNORA28 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA28 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000F8A5F_9606 snoRNA 126 7

HGNC: 32618,

RefSeq: NR_002964,

Ensembl: ENST00000606769 (view in UCSC) ,

Rfam: RF00400,

snoDB: SNODB44,

snOPY: Homo_sapiens300724,

ENA: AJ609462.1:1..126:ncRNA,

SNORA28 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNORA28 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA28 Gene

No ASD Table

Relevant External Links for SNORA28 Gene

GeneLoc Exon Structure for
SNORA28

Expression for SNORA28 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA28 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA28

SOURCE GeneReport for Unigene cluster for SNORA28 Gene:

Hs.658237
genes like me logo Genes that share expression patterns with SNORA28: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA28 Gene

Orthologs for SNORA28 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA28 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA28 31
  • 100 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Snora28 31
  • 93 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORA28 31
  • 92 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORA28 31 31 31
  • 87 (a)
OneToMany
Oppossum
(Monodelphis domestica)
Mammalia SNORA28 31
  • 79 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORA28 31 31
  • 76 (a)
OneToMany
Chicken
(Gallus gallus)
Aves SNORA28 31
  • 69 (a)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia SNORA28 31 31
  • 69 (a)
OneToMany
Species where no ortholog for SNORA28 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for SNORA28 Gene

ENSEMBL:
Gene Tree for SNORA28 (if available)
TreeFam:
Gene Tree for SNORA28 (if available)

Paralogs for SNORA28 Gene

No data available for Paralogs for SNORA28 Gene

Variants for SNORA28 Gene

Additional dbSNP identifiers (rs#s) for SNORA28 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA28 Gene

Variant ID Type Subtype PubMed ID
nsv1054574 CNV loss 25217958
nsv9168 CNV loss 18304495

Additional Variant Information for SNORA28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA28 Gene

Disorders for SNORA28 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNORA28 Gene - From: DISEASES

Disorder Aliases PubMed IDs
inflammatory bowel disease 26
  • ibd26
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORA28

genes like me logo Genes that share disorders with SNORA28: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORA28 Gene

Publications for SNORA28 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORA28 Gene

Sources for SNORA28 Gene