Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORA26 Gene

Subcategory (RNA class) for SNORA26 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA26 Gene

  • Small Nucleolar RNA, H/ACA Box 26 2 3 5
  • HBI-6 3

External Ids for SNORA26 Gene

ORGUL Members for SNORA26 Gene

Previous GeneCards Identifiers for SNORA26 Gene

  • GC04P053274
  • GC04P053579
  • GC04P049524

Summaries for SNORA26 Gene

GeneCards Summary for SNORA26 Gene

SNORA26 (Small Nucleolar RNA, H/ACA Box 26) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA26 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA26 Gene

Genomics for SNORA26 Gene

GeneHancer (GH) Regulatory Elements for SNORA26 Gene

Promoters and enhancers for SNORA26 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I052711 Promoter/Enhancer 1.7 Ensembl ENCODE 550.8 +0.4 352 4.7 HDGF PKNOX1 CLOCK SMAD1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 DANCR GC04P052715 MIR4449 SNORA26 GC04P052716 ENSG00000248375
GH04I052640 Enhancer 1 Ensembl ENCODE 11.2 -70.8 -70807 3.9 PKNOX1 INSM2 BMI1 FEZF1 ZBTB40 BATF IRF4 ATF7 FOS IKZF2 USP46 DANCR SNORA26 RNU6-1252P
GH04I052983 Enhancer 1 Ensembl ENCODE dbSUPER 10.2 +271.3 271297 1.5 CTCF ZNF654 HLF TRIM22 REST RAD21 SMC3 ZNF143 MIXL1 LOC101928658 DANCR SNORA26 PIR32665 SCFD2
GH04I052912 Enhancer 0.6 Ensembl ENCODE 10.6 +201.1 201067 3.7 RXRA REST PPARG DANCR SNORA26 USP46 LOC101928658 GC04M052884 SCFD2
GH04I052847 Enhancer 0.6 dbSUPER 10.1 +135.2 135206 2.6 DPF2 FOXA1 GATA3 JUND CTBP1 CREB1 ZNF24 FOS DANCR ERVMER34-1 ENSG00000212490 SNORA26 GC04M052856 GC04P052827
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA26 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA26 gene promoter:

Genomic Locations for SNORA26 Gene

Genomic Locations for SNORA26 Gene
chr4:52,713,249-52,713,370
(GRCh38/hg38)
Size:
122 bases
Orientation:
Plus strand
chr4:53,579,416-53,579,537
(GRCh37/hg19)

Genomic View for SNORA26 Gene

Genes around SNORA26 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA26 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA26 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA26 Gene

Proteins for SNORA26 Gene

Post-translational modifications for SNORA26 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA26 Gene

Domains & Families for SNORA26 Gene

Gene Families for SNORA26 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA26: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA26 Gene

Function for SNORA26 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA26 Gene

Localization for SNORA26 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA26 Gene

Pathways & Interactions for SNORA26 Gene

SuperPathways for SNORA26 Gene

No Data Available

Interacting Proteins for SNORA26 Gene

Gene Ontology (GO) - Biological Process for SNORA26 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA26 Gene

Drugs & Compounds for SNORA26 Gene

No Compound Related Data Available

Transcripts for SNORA26 Gene

mRNA/cDNA for SNORA26 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA26 Gene

Small nucleolar RNA, H/ACA box 26:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA26 Gene

No ASD Table

Relevant External Links for SNORA26 Gene

GeneLoc Exon Structure for
SNORA26
ECgene alternative splicing isoforms for
SNORA26

Expression for SNORA26 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA26 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA26 Gene:

SNORA26

SOURCE GeneReport for Unigene cluster for SNORA26 Gene:

Hs.635034
genes like me logo Genes that share expression patterns with SNORA26: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA26 Gene

Orthologs for SNORA26 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA26 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA26 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA26 34
  • 92 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA26 34
  • 80 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA26 34
  • 79 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm23593 34
  • 78 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA26 34
  • 69 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA26 34
  • 69 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA26 34
  • 72 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA26 34
  • 61 (a)
OneToMany
Species where no ortholog for SNORA26 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA26 Gene

ENSEMBL:
Gene Tree for SNORA26 (if available)
TreeFam:
Gene Tree for SNORA26 (if available)

Paralogs for SNORA26 Gene

No data available for Paralogs for SNORA26 Gene

Variants for SNORA26 Gene

Sequence variations from dbSNP and Humsavar for SNORA26 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000491116 -- 52,711,390(+) C/T upstream_transcript_variant
rs1000853794 -- 52,711,694(+) G/A upstream_transcript_variant
rs1001753509 -- 52,712,849(+) T/G upstream_transcript_variant
rs1002209097 -- 52,713,132(+) T/C upstream_transcript_variant
rs1002309542 -- 52,711,313(+) T/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA26 Gene

Variant ID Type Subtype PubMed ID
nsv524494 CNV loss 19592680
nsv594201 CNV loss 21841781

Additional Variant Information for SNORA26 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA26

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA26 Gene

Disorders for SNORA26 Gene

Additional Disease Information for SNORA26

No disorders were found for SNORA26 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA26 Gene

Publications for SNORA26 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORA26 Gene

Sources for SNORA26 Gene

Content
Loading form....