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Aliases for SNORA25 Gene

Subcategory (RNA class) for SNORA25 Gene


Quality Score for this RNA gene is


Aliases for SNORA25 Gene

  • Small Nucleolar RNA, H/ACA Box 25 2 3 5
  • SNORA25A 3
  • ACA25 3

External Ids for SNORA25 Gene

Previous GeneCards Identifiers for SNORA25 Gene

  • GC11M093132
  • GC11U901200
  • GC11M093174
  • GC11M093184
  • GC11M093463

Summaries for SNORA25 Gene

GeneCards Summary for SNORA25 Gene

SNORA25 (Small Nucleolar RNA, H/ACA Box 25) is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for SNORA25 Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • Small nucleolar RNA SNORA25: ACA25 is a member of the H/ACA class of snoRNA that guide the sites of modification of uridines to pseudouridines [1].

View fRNAdb secondary structures for SNORA25

Additional gene information for SNORA25 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA25 Gene

Genomics for SNORA25 Gene

GeneHancer (GH) Regulatory Elements for SNORA25 Gene

Promoters and enhancers for SNORA25 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I093731 Enhancer 0.5 ENCODE 550.8 -1.8 -1766 1.1 PAF1 POLR2B POLR2A ZBED1 SUPT5H GC11M093812 GC11M093813 GC11M093816 GC11M093817 GC11M093819 GC11M093820 GC11M093821 GC11M093822 GC11M093823 GC11M093825
GH11I093783 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.3 -54.1 -54084 2.6 PKNOX1 SMAD1 FOXA2 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B E2F8 MED17 TAF1D C11orf54 SNORA1 MRE11 ANKRD49 SNORA40 SNORA18 SNORA25 SNORA32
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA25 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA25 gene promoter:

Genomic Locations for SNORA25 Gene

Genomic Locations for SNORA25 Gene
134 bases
Minus strand

Genomic View for SNORA25 Gene

Genes around SNORA25 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA25 Gene

ORGUL Member Location for SNORA25 Gene

ORGUL Member Location for SNORA25 gene

Proteins for SNORA25 Gene

Post-translational modifications for SNORA25 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA25 Gene

Domains & Families for SNORA25 Gene

Gene Families for SNORA25 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA25: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA25 Gene

Function for SNORA25 Gene

Phenotypes From GWAS Catalog for SNORA25 Gene

Animal Model Products

miRNA for SNORA25 Gene

miRTarBase miRNAs that target SNORA25

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SNORA25 Gene

Localization for SNORA25 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA25 Gene

Pathways & Interactions for SNORA25 Gene

SuperPathways for SNORA25 Gene

No Data Available

Interacting Proteins for SNORA25 Gene

Gene Ontology (GO) - Biological Process for SNORA25 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORA25 Gene

Drugs & Compounds for SNORA25 Gene

No Compound Related Data Available

Transcripts for SNORA25 Gene

fRNAdb Secondary structures for SNORA25 Gene

  • RF00402;SNORA25;ADDF010742113.1/30-159

mRNA/cDNA for SNORA25 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA25 Gene

No ASD Table

Relevant External Links for SNORA25 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORA25 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA25 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA25 Gene:


SOURCE GeneReport for Unigene cluster for SNORA25 Gene:

genes like me logo Genes that share expression patterns with SNORA25: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA25 Gene

Orthologs for SNORA25 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA25 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORA25 34
  • 99 (a)
(Canis familiaris)
Mammalia SNORA25 34 34
  • 82 (a)
(Bos Taurus)
Mammalia SNORA25 34
  • 79 (a)
(Mus musculus)
Mammalia Gm22579 34
  • 75 (a)
Gm24539 34
  • 75 (a)
Gm22743 34
  • 74 (a)
Gm24095 34
  • 74 (a)
Gm22765 34
  • 67 (a)
Gm24945 34
  • 61 (a)
(Monodelphis domestica)
Mammalia SNORA25 34
  • 69 (a)
(Ornithorhynchus anatinus)
Mammalia SNORA25 34 34
  • 67 (a)
(Gallus gallus)
Aves SNORA25 34
  • 64 (a)
(Anolis carolinensis)
Reptilia SNORA25 34
  • 65 (a)
Species where no ortholog for SNORA25 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA25 Gene

Gene Tree for SNORA25 (if available)
Gene Tree for SNORA25 (if available)

Paralogs for SNORA25 Gene

No data available for Paralogs for SNORA25 Gene

Variants for SNORA25 Gene

Sequence variations from dbSNP and Humsavar for SNORA25 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1001122861 -- 93,731,096(-) A/G upstream_transcript_variant
rs1001194844 -- 93,730,827(-) G/A upstream_transcript_variant
rs1001392515 -- 93,730,547(-) A/G non_coding_transcript_variant
rs1002539698 -- 93,730,250(-) G/A downstream_transcript_variant
rs1002861927 -- 93,732,336(-) G/A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA25 Gene

Variant ID Type Subtype PubMed ID
esv3627294 CNV gain 21293372
nsv832232 CNV gain 17160897

Additional Variant Information for SNORA25 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA25 Gene

Disorders for SNORA25 Gene

Additional Disease Information for SNORA25

No disorders were found for SNORA25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA25 Gene

Publications for SNORA25 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  4. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  5. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1

Products for SNORA25 Gene

Sources for SNORA25 Gene

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