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Aliases for SNORA24 Gene

Subcategory (RNA class) for SNORA24 Gene

snoRNA

Quality Score for this RNA gene is

7

Aliases for SNORA24 Gene

  • Small Nucleolar RNA, H/ACA Box 24 2 3 5
  • ACA24 SnoRNA 3
  • ACA53 SnoRNA 3
  • SNORA24A 3
  • ACA24 3

External Ids for SNORA24 Gene

Previous GeneCards Identifiers for SNORA24 Gene

  • GC04P119419
  • GC04P119200
  • GC04P114936

Summaries for SNORA24 Gene

GeneCards Summary for SNORA24 Gene

SNORA24 (Small Nucleolar RNA, H/ACA Box 24) is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for SNORA24 Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • Small nucleolar RNA SNORA24: ACA24 is a member of the H/ACA class of snoRNA that guide the sites of modification of uridines to pseudouridines [1].

View fRNAdb secondary structures for SNORA24

Additional gene information for SNORA24 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA24 Gene

Genomics for SNORA24 Gene

GeneHancer (GH) Regulatory Elements for SNORA24 Gene

Promoters and enhancers for SNORA24 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I118275 Promoter/Enhancer 1.8 Ensembl ENCODE 550.8 +0.3 311 7.7 HDGF PKNOX1 FOXA2 SMAD1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 SNHG8 SNORA24 METTL14 CICP16 LOC729218 SEC24D FKBP4P1 PRSS12
GH04I118351 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 11.4 +73.5 73485 2.5 ARNT ZSCAN4 ZNF2 RAD21 ZEB1 ZNF335 GLIS2 ZNF143 RCOR1 SMARCA5 PRSS12 SNORA24 SNHG8
GH04I118337 Enhancer 0.5 ENCODE 10.8 +60.2 60154 3.8 JUND PRDM6 ATF7 FOS ATF2 SNORA24 SNHG8 CICP16 PRSS12
GH04I118335 Enhancer 0.3 ENCODE 11.8 +56.3 56341 0.1 POLR2A SNORA24 PRSS12
GH04I118285 Enhancer 0.5 ENCODE 0.4 +9.6 9567 5.8 JUND POLR2A HNF4A FOS ATF2 SNHG8 PRSS12 CICP16 SNORA24
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA24 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA24 gene promoter:

Genomic Locations for SNORA24 Gene

Genomic Locations for SNORA24 Gene
chr4:118,279,190-118,279,320
(GRCh38/hg38)
Size:
131 bases
Orientation:
Plus strand
chr4:119,199,864-119,200,978
(GRCh37/hg19)

Genomic View for SNORA24 Gene

Genes around SNORA24 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA24 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA24 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA24 Gene

ORGUL Member Location for SNORA24 Gene

ORGUL Member Location for SNORA24 gene

Proteins for SNORA24 Gene

Post-translational modifications for SNORA24 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA24 Gene

Domains & Families for SNORA24 Gene

Gene Families for SNORA24 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA24: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA24 Gene

Function for SNORA24 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA24 Gene

Localization for SNORA24 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA24 Gene

Pathways & Interactions for SNORA24 Gene

SuperPathways for SNORA24 Gene

No Data Available

Interacting Proteins for SNORA24 Gene

Gene Ontology (GO) - Biological Process for SNORA24 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA24 Gene

Drugs & Compounds for SNORA24 Gene

No Compound Related Data Available

Transcripts for SNORA24 Gene

fRNAdb Secondary structures for SNORA24 Gene

  • FR054628

mRNA/cDNA for SNORA24 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA24 Gene

No ASD Table

Relevant External Links for SNORA24 Gene

GeneLoc Exon Structure for
SNORA24
ECgene alternative splicing isoforms for
SNORA24

Expression for SNORA24 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA24 Gene

mRNA expression in normal human tissues for SNORA24 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA24 Gene:

SNORA24

SOURCE GeneReport for Unigene cluster for SNORA24 Gene:

Hs.744742
genes like me logo Genes that share expression patterns with SNORA24: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA24 Gene

Orthologs for SNORA24 Gene

Evolution for SNORA24 Gene

ENSEMBL:
Gene Tree for SNORA24 (if available)
TreeFam:
Gene Tree for SNORA24 (if available)

No data available for Orthologs for SNORA24 Gene

Paralogs for SNORA24 Gene

No data available for Paralogs for SNORA24 Gene

Variants for SNORA24 Gene

Sequence variations from dbSNP and Humsavar for SNORA24 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1002255922 -- 118,278,386(+) T/G upstream_transcript_variant
rs1002446227 -- 118,279,810(+) A/G downstream_transcript_variant
rs1004280918 -- 118,277,371(+) C/T upstream_transcript_variant
rs1004882406 -- 118,278,700(+) G/C upstream_transcript_variant
rs1006405362 -- 118,277,898(+) /A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA24 Gene

Variant ID Type Subtype PubMed ID
nsv519017 CNV loss 19592680
nsv1002771 CNV gain 25217958
esv3894015 CNV gain 25118596
esv34354 CNV gain 17911159
esv34038 CNV loss 18971310
esv2759279 CNV gain 17122850
dgv5372n100 CNV loss 25217958

Additional Variant Information for SNORA24 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA24

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA24 Gene

Disorders for SNORA24 Gene

Additional Disease Information for SNORA24

No disorders were found for SNORA24 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA24 Gene

Publications for SNORA24 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  4. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  5. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1

Products for SNORA24 Gene

Sources for SNORA24 Gene

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