Aliases for SNORA23 Gene

Subcategory (RNA class) for SNORA23 Gene

snoRNA

Number of RNA Genes sources:

4 / 17

Aliases for SNORA23 Gene

  • Small Nucleolar RNA, H/ACA Box 23 2 3 5
  • SNORA23 2 5 170
  • ACA23 2 3
  • ACA23 SnoRNA 3
  • SNODB419 177
  • SNODB17 177
  • RF00319 168

External Ids for SNORA23 Gene

Previous GeneCards Identifiers for SNORA23 Gene

  • GC11P009408
  • GC11P009121
  • GC11P009450

Summaries for SNORA23 Gene

GeneCards Summary for SNORA23 Gene

SNORA23 (Small Nucleolar RNA, H/ACA Box 23) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA23 Gene

  • Small nucleolar RNA SNORA23

Additional gene information for SNORA23 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA23 Gene

Genomics for SNORA23 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA23 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J009419 Enhancer 0.2 Ensembl 0.4 -9.0 -8965 0.4 IPO7 DENND5A lnc-TMEM41B-4 SNORA23 ZNF143
GH11J009416 Enhancer 0.2 Ensembl 0.4 -9.5 -9465 0.2 DENND5A lnc-TMEM41B-4 SNORA23 IPO7 ZNF143
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA23 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORA23 gene promoter:
  • AREB6
  • C/EBPalpha
  • CBF(2)
  • CBF-C
  • FOXJ2
  • FOXJ2 (long isoform)
  • FOXO4
  • GATA-1
  • GATA-2
  • GATA-3

Genomic Locations for SNORA23 Gene

Genomic Locations for SNORA23 Gene
chr11:9,428,766-9,428,954
(GRCh38/hg38)
Size:
189 bases
Orientation:
Plus strand
chr11:9,450,313-9,450,501
(GRCh37/hg19)
Size:
189 bases
Orientation:
Plus strand

Genomic View for SNORA23 Gene

Genes around SNORA23 on UCSC Golden Path with GeneCards custom track
SNORA23 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORA23 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA23 Gene

Proteins for SNORA23 Gene

Post-translational modifications for SNORA23 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA23 Gene

Domains & Families for SNORA23 Gene

Gene Families for SNORA23 Gene

genes like me logo Genes that share domains with SNORA23: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA23 Gene

Function for SNORA23 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA23 Gene

Localization for SNORA23 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA23 gene
Compartment Confidence
extracellular 1
cytoskeleton 1
nucleus 1

Gene Ontology (GO) - Cellular Components for SNORA23 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA23: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORA23 Gene

Pathways & Interactions for SNORA23 Gene

PathCards logo

SuperPathways for SNORA23 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA23 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA23: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA23 Gene

Drugs & Compounds for SNORA23 Gene

No Compound Related Data Available

Transcripts for SNORA23 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA23 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000064325_9606 snoRNA 189 4

HGNC: 32613,

RefSeq: NR_002962,

snoDB: SNODB17,

ENA: AJ609438.1:1..189:ncRNA,

URS000064AE5E_9606 snoRNA 182 3

Ensembl: ENST00000365128 (view in UCSC) ,

Rfam: RF00319,

snoDB: SNODB419,

URS0000818C5D_9606 snoRNA 189 1

snOPY: Homo_sapiens300735,

SNORA23 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNORA23 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA23 Gene

No ASD Table

Relevant External Links for SNORA23 Gene

GeneLoc Exon Structure for
SNORA23

Expression for SNORA23 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA23 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA23

SOURCE GeneReport for Unigene cluster for SNORA23 Gene:

Hs.689720
genes like me logo Genes that share expression patterns with SNORA23: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA23 Gene

Orthologs for SNORA23 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA23 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA23 31
  • 98 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORA23 31 31
  • 87 (a)
OneToMany
Mouse
(Mus musculus)
Mammalia Snora23 31
  • 86 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORA23 31
  • 82 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORA23 31 31
  • 76 (a)
OneToMany
Oppossum
(Monodelphis domestica)
Mammalia SNORA23 31 31 31
  • 76 (a)
OneToMany
Chicken
(Gallus gallus)
Aves SNORA23 31
  • 77 (a)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia SNORA23 31
  • 73 (a)
OneToOne
Zebrafish
(Danio rerio)
Actinopterygii SNORA23 31 31
  • 63 (a)
OneToMany
Species where no ortholog for SNORA23 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORA23 Gene

ENSEMBL:
Gene Tree for SNORA23 (if available)
TreeFam:
Gene Tree for SNORA23 (if available)

Paralogs for SNORA23 Gene

No data available for Paralogs for SNORA23 Gene

Variants for SNORA23 Gene

Additional dbSNP identifiers (rs#s) for SNORA23 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA23 Gene

Variant ID Type Subtype PubMed ID
nsv1055078 CNV gain 25217958
nsv499766 OTHER inversion 21111241
nsv7215 OTHER inversion 18451855
nsv982982 CNV duplication 23825009

Additional Variant Information for SNORA23 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA23

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA23 Gene

Disorders for SNORA23 Gene

Additional Disease Information for SNORA23

No disorders were found for SNORA23 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA23 Gene

Publications for SNORA23 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3
  4. Small Nucleolar Noncoding RNA SNORA23, Up-Regulated in Human Pancreatic Ductal Adenocarcinoma, Regulates Expression of Spectrin Repeat-Containing Nuclear Envelope 2 to Promote Growth and Metastasis of Xenograft Tumors in Mice. (PMID: 28390868) Cui L … Hiraoka N (Gastroenterology 2017) 3
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORA23 Gene

Sources for SNORA23 Gene