SNORA21B Gene (RNA Gene)

Small Nucleolar RNA, H/ACA Box 21B

GC17M038905
GIFtS:
8
See more...

Aliases for SNORA21B Gene

Subcategory (RNA class) for SNORA21B Gene

snoRNA

Number of RNA Genes sources:

1 / 17

Aliases for SNORA21B Gene

  • Small Nucleolar RNA, H/ACA Box 21B 2 3 5
  • SNORA21B 2 5
  • SNODB1531 177
  • SNODB1476 177

External Ids for SNORA21B Gene

Previous GeneCards Identifiers for SNORA21B Gene

  • GC17M038876
  • GC17M038881
  • GC17M038883
  • GC17M038894
  • GC00U936733
  • GC17U902679
  • GC17M038853
  • GC17M038855
  • GC17M038858
  • GC17M038872

Summaries for SNORA21B Gene

GeneCards Summary for SNORA21B Gene

SNORA21B (Small Nucleolar RNA, H/ACA Box 21B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA21B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SNORA21B Gene

Genomics for SNORA21B Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SNORA21B Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA21B on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNORA21B Gene

Genomic Locations for SNORA21B Gene
chr17:38,851,524-38,851,659
(GRCh38/hg38)
Size:
136 bases
Orientation:
Minus strand
chr17:37,007,777-37,007,912
(GRCh37/hg19)
Size:
136 bases
Orientation:
Minus strand

Genomic View for SNORA21B Gene

Genes around SNORA21B on UCSC Golden Path with GeneCards custom track
SNORA21B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORA21B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA21B Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORA21B Gene

Proteins for SNORA21B Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORA21B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA21B Gene

Domains & Families for SNORA21B Gene

Gene Families for SNORA21B Gene

HGNC:
genes like me logo Genes that share domains with SNORA21B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA21B Gene

Function for SNORA21B Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA21B Gene

Localization for SNORA21B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA21B Gene

Pathways & Interactions for SNORA21B Gene

PathCards logo

SuperPathways for SNORA21B Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA21B Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA21B Gene

Drugs & Compounds for SNORA21B Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORA21B Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA21B Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000ABD867_9606 snoRNA 135 3

HGNC: 52195,

RefSeq: NR_145761,

snoDB: SNODB1531,

URS0000A8C404_9606 snoRNA 136 2

Ensembl: ENST00000516890 (view in UCSC) ,

snoDB: SNODB1476,

SNORA21B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA21B Gene

No ASD Table

Relevant External Links for SNORA21B Gene

GeneLoc Exon Structure for
SNORA21B

No data available for mRNA/cDNA for SNORA21B Gene

Expression for SNORA21B Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA21B Gene

Orthologs for SNORA21B Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORA21B Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia SNORA21 31
  • 99 (a)
 OneToOne
Cow
(Bos Taurus)
 Mammalia SNORA21 31
  • 74 (a)
 OneToOne
Mouse
(Mus musculus)
 Mammalia SNORA21 31
  • 72 (a)
 OneToOne
Dog
(Canis familiaris)
 Mammalia SNORA21 31
  • 71 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia SNORA21 31
  • 68 (a)
 OneToOne
Oppossum
(Monodelphis domestica)
 Mammalia SNORA21 31
  • 62 (a)
 ManyToMany
Species where no ortholog for SNORA21B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for SNORA21B Gene

ENSEMBL:
Gene Tree for SNORA21B (if available)
TreeFam:
Gene Tree for SNORA21B (if available)

Paralogs for SNORA21B Gene

No data available for Paralogs for SNORA21B Gene

Variants for SNORA21B Gene

Additional dbSNP identifiers (rs#s) for SNORA21B Gene

Additional Variant Information for SNORA21B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA21B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA21B Gene

Disorders for SNORA21B Gene

Additional Disease Information for SNORA21B

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORA21B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA21B Gene

Publications for SNORA21B Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3

No data available for Mastermind for SNORA21B Gene

Products for SNORA21B Gene

Sources for SNORA21B Gene