Aliases for SNORA21 Gene

Subcategory (RNA class) for SNORA21 Gene

snoRNA

Number of RNA Genes sources:

4 / 17

Aliases for SNORA21 Gene

  • Small Nucleolar RNA, H/ACA Box 21 2 3 5
  • SNORA21 2 5 170
  • ACA21 2 3
  • ACA21 Small Nucleolar RNA 3
  • ACA21 SnoRNA 3
  • SNODB201 177
  • SNODB324 177
  • RF00412 168

External Ids for SNORA21 Gene

Previous GeneCards Identifiers for SNORA21 Gene

  • GC17M034266
  • GC17M037010
  • GC17M032804
  • GC17M037015
  • GC17M037024
  • GC17M037027

Summaries for SNORA21 Gene

GeneCards Summary for SNORA21 Gene

SNORA21 (Small Nucleolar RNA, H/ACA Box 21) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA21 Gene

  • Small nucleolar RNA SNORA21

Additional gene information for SNORA21 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA21 Gene

Genomics for SNORA21 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA21 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA21 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORA21 gene promoter:
  • AhR
  • AREB6
  • Arnt
  • CBF(2)
  • CREB
  • deltaCREB
  • Evi-1
  • RFX1

Genomic Locations for SNORA21 Gene

Genomic Locations for SNORA21 Gene
chr17:38,852,863-38,852,995
(GRCh38/hg38)
Size:
133 bases
Orientation:
Minus strand
chr17:37,009,116-37,009,248
(GRCh37/hg19)
Size:
133 bases
Orientation:
Minus strand

Genomic View for SNORA21 Gene

Genes around SNORA21 on UCSC Golden Path with GeneCards custom track
SNORA21 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORA21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA21 Gene

Proteins for SNORA21 Gene

Post-translational modifications for SNORA21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA21 Gene

Domains & Families for SNORA21 Gene

Gene Families for SNORA21 Gene

genes like me logo Genes that share domains with SNORA21: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA21 Gene

Function for SNORA21 Gene

Phenotypes From GWAS Catalog for SNORA21 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA21 Gene

Localization for SNORA21 Gene

Gene Ontology (GO) - Cellular Components for SNORA21 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA21: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA21 Gene

Pathways & Interactions for SNORA21 Gene

PathCards logo

SuperPathways for SNORA21 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA21 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA21: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA21 Gene

Drugs & Compounds for SNORA21 Gene

No Compound Related Data Available

Transcripts for SNORA21 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA21 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004EA987_9606 snoRNA 133 4

HGNC: 32611,

RefSeq: NR_002576,

snoDB: SNODB201,

ENA: AJ609436.1:1..133:ncRNA,

URS0000634EB5_9606 snoRNA 132 4

Ensembl: ENST00000362423 (view in UCSC) ,

Rfam: RF00412,

snoDB: SNODB324,

snOPY: Homo_sapiens300710,

SNORA21 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNORA21 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA21 Gene

No ASD Table

Relevant External Links for SNORA21 Gene

GeneLoc Exon Structure for
SNORA21

Expression for SNORA21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA21 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA21

SOURCE GeneReport for Unigene cluster for SNORA21 Gene:

Hs.738742
genes like me logo Genes that share expression patterns with SNORA21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA21 Gene

Orthologs for SNORA21 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA21 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA21 31
  • 100 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORA21 31
  • 87 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORA21 31
  • 86 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Snora21 31
  • 85 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia SNORA21 31
  • 74 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORA21 31
  • 71 (a)
OneToOne
Chicken
(Gallus gallus)
Aves SNORA21 31
  • 73 (a)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia SNORA21 31 31
  • 59 (a)
OneToMany
Zebrafish
(Danio rerio)
Actinopterygii SNORA21 31 31
  • 60 (a)
OneToMany
Species where no ortholog for SNORA21 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORA21 Gene

ENSEMBL:
Gene Tree for SNORA21 (if available)
TreeFam:
Gene Tree for SNORA21 (if available)

Paralogs for SNORA21 Gene

No data available for Paralogs for SNORA21 Gene

Variants for SNORA21 Gene

Additional dbSNP identifiers (rs#s) for SNORA21 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA21 Gene

Variant ID Type Subtype PubMed ID
nsv1146669 OTHER inversion 26484159
nsv833439 CNV loss 17160897

Additional Variant Information for SNORA21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA21 Gene

Disorders for SNORA21 Gene

Additional Disease Information for SNORA21

No disorders were found for SNORA21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA21 Gene

Publications for SNORA21 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3
  3. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J … Bakin A (Journal of molecular biology 1997) 2 3
  4. Overexpression of SNORA21 suppresses tumorgenesis of gallbladder cancer in vitro and in vivo. (PMID: 31401397) Qin Y … Luo Q (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2019) 3
  5. SNORA21 - An Oncogenic Small Nucleolar RNA, with a Prognostic Biomarker Potential in Human Colorectal Cancer. (PMID: 28734806) Yoshida K … Goel A (EBioMedicine 2017) 3

Products for SNORA21 Gene

Sources for SNORA21 Gene