Free for academic non-profit institutions. Other users need a Commercial license
Aliases for SNORA21 Gene
Data sources for SNORA21 Gene:
Subcategory (RNA class) for SNORA21 Gene
snoRNA
Aliases for SNORA21 Gene
- Small Nucleolar RNA, H/ACA Box 21 (HGNC, NCBI Entrez Gene, Ensembl)
- SNORA21 (Ensembl, snOPY)
- ACA21 (HGNC, NCBI Entrez Gene)
- ACA21 Small Nucleolar RNA (NCBI Entrez Gene)
- ACA21 SnoRNA (NCBI Entrez Gene)
- SNODB201 (snoDB)
- SNODB324 (snoDB)
- RF00412 (Rfam)
External Ids for SNORA21 Gene
- HGNC: 32611
- NCBI Entrez Gene: 619505
- Ensembl: ENSG00000199293
Previous GeneCards Identifiers for SNORA21 Gene
- GC17M034266
- GC17M037010
- GC17M032804
- GC17M037015
- GC17M037024
- GC17M037027
Summaries for SNORA21 Gene
GeneCards Summary for SNORA21 Gene
SNORA21 (Small Nucleolar RNA, H/ACA Box 21) is an RNA Gene, and is affiliated with the snoRNA class.
Rfam classification for SNORA21 Gene
-
Small nucleolar RNA SNORA21
Additional gene information for SNORA21 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA21 Gene
Genomics for SNORA21 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SNORA21 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNORA21 on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the SNORA21 gene promoter:
-
- AhR
- AREB6
- Arnt
- CBF(2)
- CREB
- deltaCREB
- Evi-1
- RFX1
Genomic Locations for SNORA21 Gene
Latest Assembly
- chr17:38,852,863-38,852,995
- (GRCh38/hg38)
- Size:
- 133 bases
- Orientation:
- Minus strand
Previous Assembly
- chr17:37,009,116-37,009,248
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 133 bases
- Orientation:
- Minus strand
- chr17:37,009,116-37,009,247
- (GRCh37/hg19 by Ensembl)
- Size:
- 132 bases
- Orientation:
- Minus strand
Genomic View for SNORA21 Gene
Genes around SNORA21 on UCSC Golden Path with GeneCards custom track
SNORA21 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 17q12 by HGNC
- 17q12 by Entrez Gene
- 17q12 by Ensembl
SNORA21 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNORA21 Gene
Proteins for SNORA21 Gene
Post-translational modifications for SNORA21 Gene
No Post-translational modifications
No data available for DME Specific Peptides for SNORA21 Gene
Domains & Families for SNORA21 Gene
Gene Families for SNORA21 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA21 Gene
Function for SNORA21 Gene
Phenotypes From GWAS Catalog for SNORA21 Gene
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNORA21 - Starting at $85 >
- * SNORA21 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for SNORA21 - Starting at $45 >
- * SNORA21 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA21 Gene
Localization for SNORA21 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA21 Gene
Pathways & Interactions for SNORA21 Gene
No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA21 Gene
Transcripts for SNORA21 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA21 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000634EB5_9606 | snoRNA | 132 | 4 |
Ensembl: ENST00000362423 (view in UCSC) , Rfam: RF00412, snoDB: SNODB324, snOPY: Homo_sapiens300710, |
| URS00004EA987_9606 | snoRNA | 133 | 3 |
RefSeq: NR_002576, snoDB: SNODB201, ENA: AJ609436.1:1..133:ncRNA, |
| URS0001BC09B1_9606 | snoRNA | 133 | 1 |
Rfam: RF00412, |
SNORA21 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for SNORA21 Gene
- 2 NCBI additional mRNA sequence :
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNORA21 - Starting at $85 >
- * SNORA21 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for SNORA21 - Starting at $45 >
- * SNORA21 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Relevant External Links for SNORA21 Gene
- GeneLoc Exon Structure for
- SNORA21
Expression for SNORA21 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA21
SOURCE GeneReport for Unigene cluster for SNORA21 Gene:
Hs.738742Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA21 Gene
Orthologs for SNORA21 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | SNORA21 31 |
|
OneToOne | |
| Cow (Bos Taurus) |
Mammalia | SNORA21 31 |
|
OneToOne | |
| Dog (Canis familiaris) |
Mammalia | SNORA21 31 |
|
OneToOne | |
| Mouse (Mus musculus) |
Mammalia | Snora21 31 |
|
OneToOne | |
| Oppossum (Monodelphis domestica) |
Mammalia | SNORA21 31 |
|
OneToOne | |
| Platypus (Ornithorhynchus anatinus) |
Mammalia | SNORA21 31 |
|
OneToOne | |
| Chicken (Gallus gallus) |
Aves | SNORA21 31 |
|
OneToOne | |
| Lizard (Anolis carolinensis) |
Reptilia | SNORA21 31 31 |
|
OneToMany | |
| Zebrafish (Danio rerio) |
Actinopterygii | SNORA21 31 31 |
|
OneToMany |
- Species where no ortholog for SNORA21 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Rainbow Trout (Oncorhynchus mykiss)
- Rat (Rattus norvegicus)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Squirt (Ciona savignyi)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
Paralogs for SNORA21 Gene
No data available for Paralogs for SNORA21 Gene
Variants for SNORA21 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| nsv1146669 | OTHER | inversion | 26484159 |
| nsv833439 | CNV | loss | 17160897 |
Additional Variant Information for SNORA21 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORA21
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA21 Gene
Disorders for SNORA21 Gene
Additional Disease Information for SNORA21
No disorders were found for SNORA21 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA21 Gene
Publications for SNORA21 Gene
- snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3
- Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3
- Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J … Bakin A (Journal of molecular biology 1997) 2 3
- Overexpression of SNORA21 suppresses tumorgenesis of gallbladder cancer in vitro and in vivo. (PMID: 31401397) Qin Y … Luo Q (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2019) 3
- SNORA21 - An Oncogenic Small Nucleolar RNA, with a Prognostic Biomarker Potential in Human Colorectal Cancer. (PMID: 28734806) Yoshida K … Goel A (EBioMedicine 2017) 3
ExternalLinks
Products for SNORA21 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORA21
- Origene Custom Protein Services for SNORA21
- Browse OriGene Inhibitory RNA Products For SNORA21
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SNORA21
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNORA21
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNORA21
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNORA21
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNORA21
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNORA21
Sources for SNORA21 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB