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Aliases for SNORA19 Gene

Subcategory (RNA class) for SNORA19 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA19 Gene

  • Small Nucleolar RNA, H/ACA Box 19 2 3 5
  • ACA19 Small Nucleolar RNA 3
  • ACA19 3

External Ids for SNORA19 Gene

Previous GeneCards Identifiers for SNORA19 Gene

  • GC10M120813
  • GC10M120815
  • GC10M120818
  • GC10M114448
  • GC10M120821
  • GC10M120825
  • GC10M120828
  • GC10M119061

Summaries for SNORA19 Gene

GeneCards Summary for SNORA19 Gene

SNORA19 (Small Nucleolar RNA, H/ACA Box 19) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA19 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA19 Gene

Genomics for SNORA19 Gene

GeneHancer (GH) Regulatory Elements for SNORA19 Gene

Promoters and enhancers for SNORA19 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I119089 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -30.8 -30804 3 ATF1 PKNOX1 ARNT BRCA1 NCOA2 TCF12 KLF7 FOS ATF7 RUNX3 SEC23IP TIAL1 ENSG00000222588 SNORA19 NANOS1 ENSG00000271343 GC10P119080
GH10I119111 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.5 -53.4 -53369 3.8 FOXA2 MLX ARID4B ZNF48 ETS1 YY1 FOS RXRA ZHX2 MXD4 GC10P119111 EIF3A ENSG00000222588 SNORA19 NANOS1 FAM45A SFXN4
GH10I119100 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.8 -41.0 -41008 2.1 E4F1 ZNF335 ZFHX2 CTBP1 EGR1 ZNF366 SCRT2 ZNF600 EGR2 ZNF362 PIR48765 SFXN4 EIF3A SNORA19 ENSG00000222588 NANOS1 ENSG00000271343
GH10I119006 Enhancer 1.1 Ensembl ENCODE 10.6 +53.2 53155 1.5 HDAC1 PKNOX1 FOXA2 NFIB NEUROD1 SIN3A RAD21 BRCA1 ZSCAN5C SCRT2 ENSG00000222588 SNORA19 EIF3A NANOS1 ENSG00000229272 GC10P119001 PIR62502
GH10I119022 Enhancer 0.7 Ensembl ENCODE 11.4 +36.9 36872 1.3 SCRT1 GATA3 SCRT2 RCOR1 MNT ZIC2 CHD2 NANOS1 SNORA19 ENSG00000222588 EIF3A PIR62502 ENSG00000229272 GC10P119001
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA19 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA19 gene promoter:

Genomic Locations for SNORA19 Gene

Genomic Locations for SNORA19 Gene
chr10:119,060,011-119,060,138
(GRCh38/hg38)
Size:
128 bases
Orientation:
Minus strand
chr10:120,819,523-120,819,650
(GRCh37/hg19)

Genomic View for SNORA19 Gene

Genes around SNORA19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA19 Gene

Proteins for SNORA19 Gene

Post-translational modifications for SNORA19 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA19 Gene

Domains & Families for SNORA19 Gene

Gene Families for SNORA19 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA19: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA19 Gene

Function for SNORA19 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA19 Gene

Localization for SNORA19 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA19 Gene

Pathways & Interactions for SNORA19 Gene

SuperPathways for SNORA19 Gene

No Data Available

Interacting Proteins for SNORA19 Gene

Gene Ontology (GO) - Biological Process for SNORA19 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA19 Gene

Drugs & Compounds for SNORA19 Gene

No Compound Related Data Available

Transcripts for SNORA19 Gene

mRNA/cDNA for SNORA19 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA19 Gene

Small nucleolar RNA, H/ACA box 19:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA19 Gene

No ASD Table

Relevant External Links for SNORA19 Gene

GeneLoc Exon Structure for
SNORA19
ECgene alternative splicing isoforms for
SNORA19

Expression for SNORA19 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA19 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA19 Gene:

SNORA19

SOURCE GeneReport for Unigene cluster for SNORA19 Gene:

Hs.688653
genes like me logo Genes that share expression patterns with SNORA19: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA19 Gene

Orthologs for SNORA19 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA19 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA19 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA19 34
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA19 34 34
  • 90 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm23658 34
  • 89 (a)
OneToMany
Snora19 34
  • 89 (a)
OneToMany
Gm24625 34
  • 81 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA19 34
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA19 34 34 34 34
  • 81 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA19 34
  • 80 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA19 34
  • 74 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORA19 34
  • 66 (a)
OneToMany
Species where no ortholog for SNORA19 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA19 Gene

ENSEMBL:
Gene Tree for SNORA19 (if available)
TreeFam:
Gene Tree for SNORA19 (if available)

Paralogs for SNORA19 Gene

No data available for Paralogs for SNORA19 Gene

Variants for SNORA19 Gene

Sequence variations from dbSNP and Humsavar for SNORA19 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1002548867 -- 119,061,601(-) T/C upstream_transcript_variant
rs1003648726 -- 119,061,663(-) G/T upstream_transcript_variant
rs1005043364 -- 119,060,941(-) T/C upstream_transcript_variant
rs1006163805 -- 119,059,921(-) C/T downstream_transcript_variant
rs1006440690 -- 119,061,795(-) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA19 Gene

Variant ID Type Subtype PubMed ID
nsv825582 CNV gain 20364138
nsv1041093 CNV gain 25217958

Additional Variant Information for SNORA19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA19

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA19 Gene

Disorders for SNORA19 Gene

Additional Disease Information for SNORA19

No disorders were found for SNORA19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA19 Gene

Publications for SNORA19 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  4. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J … Bakin A (Journal of molecular biology 1997) 3 58

Products for SNORA19 Gene

Sources for SNORA19 Gene

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