Aliases for SNORA18 Gene

Subcategory (RNA class) for SNORA18 Gene

snoRNA

Number of RNA Genes sources:

4 / 17

Aliases for SNORA18 Gene

  • Small Nucleolar RNA, H/ACA Box 18 2 3 5
  • SNORA18 2 5 170
  • ACA18 2 3
  • ACA18 SnoRNA 3
  • RF00425 168
  • SNODB68 177

External Ids for SNORA18 Gene

Previous GeneCards Identifiers for SNORA18 Gene

  • GC11M093142
  • GC11M093150
  • GC11M093157
  • GC11M093163
  • GC11M093169
  • GC11M093179
  • GC11M093188
  • GC11M093199
  • GC11M093470
  • GC11M093476
  • GC11M089544
  • GC11M093484
  • GC11M093500
  • GC11M093508
  • GC11M093516
  • GC11M093526
  • GC11M093542
  • GC11M093566
  • GC11M093737
  • GC11M093749
  • GC11M093946
  • GC11M094034
  • GC11M094047
  • GC11M094225
  • GC11M093760
  • GC11M093770
  • GC11M093779
  • GC11M093789
  • GC11M093801
  • GC11M093810
  • GC11M093940
  • GC11M093926

Summaries for SNORA18 Gene

GeneCards Summary for SNORA18 Gene

SNORA18 (Small Nucleolar RNA, H/ACA Box 18) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA18 Gene

  • Small nucleolar RNA SNORA18

Additional gene information for SNORA18 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA18 Gene

Genomics for SNORA18 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA18 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA18 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORA18 gene promoter:
  • aMEF-2
  • GR
  • GR-alpha
  • MEF-2
  • MEF-2A
  • POU2F1
  • POU2F1a
  • RORalpha1

Genomic Locations for SNORA18 Gene

Genomic Locations for SNORA18 Gene
chr11:93,733,466-93,733,597
(GRCh38/hg38)
Size:
132 bases
Orientation:
Minus strand
chr11:93,466,632-93,466,763
(GRCh37/hg19)
Size:
132 bases
Orientation:
Minus strand

Genomic View for SNORA18 Gene

Genes around SNORA18 on UCSC Golden Path with GeneCards custom track
SNORA18 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORA18 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA18 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA18 Gene

Proteins for SNORA18 Gene

Post-translational modifications for SNORA18 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA18 Gene

Domains & Families for SNORA18 Gene

Gene Families for SNORA18 Gene

genes like me logo Genes that share domains with SNORA18: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA18 Gene

Function for SNORA18 Gene

Phenotypes From GWAS Catalog for SNORA18 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA18 Gene

Localization for SNORA18 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA18 gene
Compartment Confidence
nucleus 1

Gene Ontology (GO) - Cellular Components for SNORA18 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA18: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORA18 Gene

Pathways & Interactions for SNORA18 Gene

PathCards logo

SuperPathways for SNORA18 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA18 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA18: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA18 Gene

Drugs & Compounds for SNORA18 Gene

No Compound Related Data Available

Transcripts for SNORA18 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA18 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000202A89_9606 snoRNA 132 7

HGNC: 32608,

RefSeq: NR_002959,

Ensembl: ENST00000384416 (view in UCSC) ,

Rfam: RF00425,

snoDB: SNODB68,

snOPY: Homo_sapiens300751,

ENA: AJ609471.1:1..132:ncRNA,

SNORA18 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNORA18 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA18 Gene

No ASD Table

Relevant External Links for SNORA18 Gene

GeneLoc Exon Structure for
SNORA18

Expression for SNORA18 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA18 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA18

genes like me logo Genes that share expression patterns with SNORA18: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA18 Gene

Orthologs for SNORA18 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA18 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA18 31
  • 99 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORA18 31
  • 87 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm24455 31
  • 87 (a)
OneToMany
Cow
(Bos Taurus)
Mammalia SNORA18 31
  • 84 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORA18 31
  • 73 (a)
OneToMany
Oppossum
(Monodelphis domestica)
Mammalia SNORA18 31
  • 68 (a)
ManyToMany
Chicken
(Gallus gallus)
Aves SNORA18 31
  • 73 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia SNORA18 31
  • 67 (a)
OneToMany
Zebrafish
(Danio rerio)
Actinopterygii SNORA18 31
  • 64 (a)
OneToMany
Species where no ortholog for SNORA18 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORA18 Gene

ENSEMBL:
Gene Tree for SNORA18 (if available)
TreeFam:
Gene Tree for SNORA18 (if available)

Paralogs for SNORA18 Gene

No data available for Paralogs for SNORA18 Gene

Variants for SNORA18 Gene

Additional dbSNP identifiers (rs#s) for SNORA18 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA18 Gene

Variant ID Type Subtype PubMed ID
esv3627294 CNV gain 21293372
nsv832232 CNV gain 17160897

Additional Variant Information for SNORA18 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA18

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA18 Gene

Disorders for SNORA18 Gene

Additional Disease Information for SNORA18

No disorders were found for SNORA18 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA18 Gene

Publications for SNORA18 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3
  3. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORA18 Gene

Sources for SNORA18 Gene