Aliases for SNORA16B Gene

Subcategory (RNA class) for SNORA16B Gene

snoRNA

Number of RNA Genes sources:

4 / 17

Aliases for SNORA16B Gene

  • Small Nucleolar RNA, H/ACA Box 16B 2 3 5
  • SNORA16B 2 5 170
  • U98b 2 3
  • SNODB1619 177
  • SNODB795 177
  • RF00190 168

External Ids for SNORA16B Gene

Previous GeneCards Identifiers for SNORA16B Gene

  • GC01U901235
  • GC01P210593
  • GC01P212526
  • GC01P183201

Summaries for SNORA16B Gene

GeneCards Summary for SNORA16B Gene

SNORA16B (Small Nucleolar RNA, H/ACA Box 16B) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA16B Gene

  • Small nucleolar RNA SNORA16B/SNORA16A family

Additional gene information for SNORA16B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA16B Gene

Genomics for SNORA16B Gene

GeneHancer (GH) Regulatory Elements Pubs


GeneHancers around SNORA16B on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORA16B gene promoter:
  • AML1a
  • AREB6
  • C/EBPalpha
  • FOXL1
  • Nkx6-1
  • SREBP-1a
  • SREBP-1b
  • SREBP-1c
  • SRY
  • TBP

Genomic Locations for SNORA16B Gene

Genomic Locations for SNORA16B Gene
chr1:212,352,816-212,352,950
(GRCh38/hg38)
Size:
135 bases
Orientation:
Plus strand
chr1:212,526,158-212,526,292
(GRCh37/hg19)
Size:
135 bases
Orientation:
Plus strand

Genomic View for SNORA16B Gene

Genes around SNORA16B on UCSC Golden Path with GeneCards custom track
SNORA16B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORA16B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA16B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA16B Gene

Proteins for SNORA16B Gene

Post-translational modifications for SNORA16B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA16B Gene

Domains & Families for SNORA16B Gene

Gene Families for SNORA16B Gene

genes like me logo Genes that share domains with SNORA16B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA16B Gene

Function for SNORA16B Gene

Phenotypes From GWAS Catalog for SNORA16B Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA16B Gene

Localization for SNORA16B Gene

Gene Ontology (GO) - Cellular Components for SNORA16B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA16B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA16B Gene

Pathways & Interactions for SNORA16B Gene

PathCards logo

SuperPathways for SNORA16B Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA16B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA16B: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA16B Gene

Drugs & Compounds for SNORA16B Gene

No Compound Related Data Available

Transcripts for SNORA16B Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA16B Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006AF815_9606 snoRNA 135 4

Ensembl: ENST00000364674 (view in UCSC) ,

Rfam: RF00190,

snoDB: SNODB795,

snOPY: Homo_sapiens300677,

URS000048213C_9606 snoRNA 133 4

HGNC: 32606,

RefSeq: NR_004389,

snoDB: SNODB1619,

ENA: AY349599.1:1..133:ncRNA,

SNORA16B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA16B Gene

No ASD Table

Relevant External Links for SNORA16B Gene

GeneLoc Exon Structure for
SNORA16B

No data available for mRNA/cDNA for SNORA16B Gene

Expression for SNORA16B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA16B Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA16B

SOURCE GeneReport for Unigene cluster for SNORA16B Gene:

Hs.707958
genes like me logo Genes that share expression patterns with SNORA16B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA16B Gene

Orthologs for SNORA16B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA16B Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA16 31
  • 97 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORA16 31
  • 87 (a)
OneToMany
Dog
(Canis familiaris)
Mammalia SNORA16 31
  • 86 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm23454 31
  • 77 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia SNORA16 31
  • 72 (a)
OneToMany
Chicken
(Gallus gallus)
Aves SNORA16 31
  • 60 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia SNORA16 31
  • 63 (a)
OneToMany
Zebrafish
(Danio rerio)
Actinopterygii SNORA16 31
  • 62 (a)
ManyToMany
Species where no ortholog for SNORA16B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORA16B Gene

ENSEMBL:
Gene Tree for SNORA16B (if available)
TreeFam:
Gene Tree for SNORA16B (if available)

Paralogs for SNORA16B Gene

No data available for Paralogs for SNORA16B Gene

Variants for SNORA16B Gene

Additional dbSNP identifiers (rs#s) for SNORA16B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA16B Gene

Variant ID Type Subtype PubMed ID
nsv549139 CNV gain 21841781

Additional Variant Information for SNORA16B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA16B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA16B Gene

Disorders for SNORA16B Gene

Additional Disease Information for SNORA16B

No disorders were found for SNORA16B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA16B Gene

Publications for SNORA16B Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3
  2. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P … Cavaillé J (Nucleic acids research 2003) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORA16B Gene

Sources for SNORA16B Gene