Aliases for SNORA11F Gene

Subcategory (RNA class) for SNORA11F Gene

snoRNA

Quality Score for this RNA gene is

14

Aliases for SNORA11F Gene

  • Small Nucleolar RNA, H/ACA Box 11F 2 3 5
  • SNORA11DL1 176
  • SNORA11F 2
  • RF00614 174

External Ids for SNORA11F Gene

Previous GeneCards Identifiers for SNORA11F Gene

  • GC00U936723
  • GC10U902719

Summaries for SNORA11F Gene

GeneCards Summary for SNORA11F Gene

SNORA11F (Small Nucleolar RNA, H/ACA Box 11F) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA11F Gene

  • Small nucleolar RNA SNORA11

Additional gene information for SNORA11F Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA11F Gene

Genomics for SNORA11F Gene

GeneHancer (GH) Regulatory Elements for SNORA11F Gene

Promoters and enhancers for SNORA11F Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J073126 Enhancer 0.3 Ensembl 750.6 -0.4 -394 0.4 PRDM10 ENSG00000272599 SNORA11F NUDT13 lnc-FAM149B1-3
GH10J073131 Enhancer 1.1 Ensembl ENCODE 0.4 -5.8 -5789 1.6 LCORL FOXA1 MLX RBPJ NR2F1 NR2F6 CREB1 MIXL1 NFYC RAD21 NUDT13 CFAP70 SNORA11F lnc-FAM149B1-3 ECD
GH10J073159 Enhancer 0.6 ENCODE 0.3 -33.1 -33108 0.4 CTCF MIXL1 RAD21 ZNF384 REST TRIM22 EGR1 RUNX3 SMC3 NBN CFAP70 ECD lnc-FAM149B1-3 SNORA11F
GH10J073160 Enhancer 0.3 Ensembl 0.3 -33.5 -33494 0.2 CTCF ZBTB33 ECD lnc-FAM149B1-3 SNORA11F
GH10J073136 Enhancer 0.2 ENCODE 0.4 -10.5 -10500 1.3 NUDT13 CFAP70 ENSG00000272791 SNORA11F lnc-FAM149B1-3 ECD
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA11F on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORA11F Gene

Genomic Locations for SNORA11F Gene
chr10:73,126,080-73,126,207
(GRCh38/hg38)
Size:
128 bases
Orientation:
Minus strand
chr10:74,885,838-74,885,965
(GRCh37/hg19)
Size:
128 bases
Orientation:
Minus strand

Genomic View for SNORA11F Gene

Genes around SNORA11F on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA11F Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA11F Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA11F Gene

Proteins for SNORA11F Gene

Post-translational modifications for SNORA11F Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA11F Gene

Domains & Families for SNORA11F Gene

Gene Families for SNORA11F Gene

genes like me logo Genes that share domains with SNORA11F: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA11F Gene

Function for SNORA11F Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA11F Gene

Localization for SNORA11F Gene

Gene Ontology (GO) - Cellular Components for SNORA11F Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA11F: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA11F Gene

Pathways & Interactions for SNORA11F Gene

PathCards logo

SuperPathways for SNORA11F Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA11F Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA11F: view

No data available for Pathways by source and SIGNOR curated interactions for SNORA11F Gene

Drugs & Compounds for SNORA11F Gene

No Compound Related Data Available

Transcripts for SNORA11F Gene

mRNA/cDNA for SNORA11F Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) Rfam transcripts :
(1) snOPY transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA11F Gene

No ASD Table

Relevant External Links for SNORA11F Gene

GeneLoc Exon Structure for
SNORA11F
ECgene alternative splicing isoforms for
SNORA11F

Expression for SNORA11F Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA11F Gene

Orthologs for SNORA11F Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORA11F Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA11 33
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA11 33 33
  • 81 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22488 33
  • 80 (a)
OneToMany
Species where no ortholog for SNORA11F was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA11F Gene

ENSEMBL:
Gene Tree for SNORA11F (if available)
TreeFam:
Gene Tree for SNORA11F (if available)

Paralogs for SNORA11F Gene

No data available for Paralogs for SNORA11F Gene

Variants for SNORA11F Gene

Sequence variations from dbSNP and Humsavar for SNORA11F Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000244191 -- 73,126,478(-) C/A upstream_transcript_variant
rs1000851674 -- 73,125,657(-) A/ACA downstream_transcript_variant
rs1002872668 -- 73,128,080(-) G/T upstream_transcript_variant
rs1003146405 -- 73,126,065(-) TTTTTTTT/TTTTTTT/TTTTTTTTT downstream_transcript_variant
rs1003209515 -- 73,126,572(-) T/A upstream_transcript_variant

Additional Variant Information for SNORA11F Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA11F

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA11F Gene

Disorders for SNORA11F Gene

Additional Disease Information for SNORA11F

No disorders were found for SNORA11F Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA11F Gene

Publications for SNORA11F Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3 56

No data available for External Links for SNORA11F Gene

Products for SNORA11F Gene

Sources for SNORA11F Gene