Aliases for SNORA11B Gene

Subcategory (RNA class) for SNORA11B Gene

snoRNA

Number of RNA Genes sources:

2 / 14

Aliases for SNORA11B Gene

  • Small Nucleolar RNA, H/ACA Box 11B 2 3 5
  • Small Nucleolar RNA, H/ACA Box 11B (Retrotransposed) 2 3
  • SNORA11B 2 174
  • SNORA11B SnoRNA 3
  • RF00614 172

External Ids for SNORA11B Gene

Previous GeneCards Identifiers for SNORA11B Gene

  • GC14U900763
  • GC14P090663
  • GC14P091592
  • GC14P071768

Summaries for SNORA11B Gene

GeneCards Summary for SNORA11B Gene

SNORA11B (Small Nucleolar RNA, H/ACA Box 11B) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA11B Gene

  • Small nucleolar RNA SNORA11

Additional gene information for SNORA11B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA11B Gene

Genomics for SNORA11B Gene

GeneHancer (GH) Regulatory Elements for SNORA11B Gene


GeneHancers around SNORA11B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA11B gene promoter:
  • aMEF-2
  • c-Ets-1
  • CBF(2)
  • HNF-4alpha1
  • HNF-4alpha2
  • MEF-2A
  • NF-1
  • NF-Y
  • NRF-2
  • Pbx1a

Genomic Locations for SNORA11B Gene

Genomic Locations for SNORA11B Gene
chr14:91,126,425-91,126,553
(GRCh38/hg38)
Size:
129 bases
Orientation:
Plus strand
chr14:91,592,769-91,592,897
(GRCh37/hg19)
Size:
129 bases
Orientation:
Plus strand

Genomic View for SNORA11B Gene

Genes around SNORA11B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA11B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA11B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA11B Gene

Proteins for SNORA11B Gene

Post-translational modifications for SNORA11B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA11B Gene

Domains & Families for SNORA11B Gene

Gene Families for SNORA11B Gene

genes like me logo Genes that share domains with SNORA11B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA11B Gene

Function for SNORA11B Gene

Phenotypes From GWAS Catalog for SNORA11B Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA11B Gene

Localization for SNORA11B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA11B Gene

Pathways & Interactions for SNORA11B Gene

PathCards logo

SuperPathways for SNORA11B Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNORA11B Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA11B Gene

Drugs & Compounds for SNORA11B Gene

No Compound Related Data Available

Transcripts for SNORA11B Gene

mRNA/cDNA for SNORA11B Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 Rfam transcripts :
1 snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA11B Gene

No ASD Table

Relevant External Links for SNORA11B Gene

GeneLoc Exon Structure for
SNORA11B

Expression for SNORA11B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA11B Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA11B

SOURCE GeneReport for Unigene cluster for SNORA11B Gene:

Hs.693444
genes like me logo Genes that share expression patterns with SNORA11B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA11B Gene

Orthologs for SNORA11B Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORA11B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA11 31
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA11 31 31
  • 82 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22488 31
  • 78 (a)
OneToMany
Species where no ortholog for SNORA11B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA11B Gene

ENSEMBL:
Gene Tree for SNORA11B (if available)
TreeFam:
Gene Tree for SNORA11B (if available)

Paralogs for SNORA11B Gene

No data available for Paralogs for SNORA11B Gene

Variants for SNORA11B Gene

Additional dbSNP identifiers (rs#s) for SNORA11B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA11B Gene

Variant ID Type Subtype PubMed ID
nsv1046924 CNV gain 25217958

Additional Variant Information for SNORA11B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA11B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA11B Gene

Disorders for SNORA11B Gene

Additional Disease Information for SNORA11B

No disorders were found for SNORA11B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA11B Gene

Publications for SNORA11B Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 54
  2. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang JH … Qu LH (Nucleic acids research 2006) 3 54

Products for SNORA11B Gene

Sources for SNORA11B Gene