Aliases for SNORA10B Gene

Subcategory (RNA class) for SNORA10B Gene

snoRNA

Quality Score for this RNA gene is

14

Aliases for SNORA10B Gene

  • Small Nucleolar RNA, H/ACA Box 10B 2 3 5
  • SNORA10L2 176
  • SNORA10B 2
  • RF00264 174

External Ids for SNORA10B Gene

Previous GeneCards Identifiers for SNORA10B Gene

  • GC00U936694
  • GC02U904485

Summaries for SNORA10B Gene

GeneCards Summary for SNORA10B Gene

SNORA10B (Small Nucleolar RNA, H/ACA Box 10B) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA10B Gene

  • Small nucleolar RNA SNORA64/SNORA10 family

Additional gene information for SNORA10B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA10B Gene

Genomics for SNORA10B Gene

GeneHancer (GH) Regulatory Elements for SNORA10B Gene

Promoters and enhancers for SNORA10B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J030230 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.6 +48.0 47978 11.6 ZNF24 SP1 CTCF POLR2A USF2 CC2D1A ETV6 RELA L3MBTL2 MAX LBH SNORA10B YPEL5 HSALNG0013963 lnc-YPEL5-5
GH02J030217 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 12.1 +30.4 30446 3.4 GATA3 SREBF1 TCF7L2 ZNF217 MNT NFIB NCOA3 MYC ZNF687 IKZF1 HSALNG0013961 SNORA10B HSALNG0013962
GH02J030661 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.2 +477.2 477238 6.3 ZBTB40 POLR2A CREB1 SREBF1 MNT TEAD4 ZC3H8 CSDE1 MAFK HNRNPUL1 SNORA10B ENSG00000278908 lnc-CAPN13-3 lnc-CAPN13-1
GH02J030264 Promoter/Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +78.9 78926 4.4 CC2D1A SP7 ZNF512 ZNF316 JUND EGR1 FOS NCOR1 NR2F2 ZFHX2 SNORA10B LBH YPEL5 piR-31951-013 lnc-YPEL5-5
GH02J030407 Enhancer 1.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas 10.4 +223.3 223312 7.7 SP1 MAFK CBFA2T2 SMARCA4 POLR2A NFE2L2 ZNF316 NFE2 CTBP1 MAFG LBH SNORA10B LCLAT1 LINC01936 YPEL5 ENSG00000280154 RF01061-082
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA10B on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORA10B Gene

Genomic Locations for SNORA10B Gene
chr2:30,187,434-30,187,566
(GRCh38/hg38)
Size:
133 bases
Orientation:
Plus strand
chr2:30,410,300-30,410,432
(GRCh37/hg19)
Size:
133 bases
Orientation:
Plus strand

Genomic View for SNORA10B Gene

Genes around SNORA10B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA10B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA10B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA10B Gene

Proteins for SNORA10B Gene

Post-translational modifications for SNORA10B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA10B Gene

Domains & Families for SNORA10B Gene

Gene Families for SNORA10B Gene

genes like me logo Genes that share domains with SNORA10B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA10B Gene

Function for SNORA10B Gene

Phenotypes From GWAS Catalog for SNORA10B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA10B Gene

Localization for SNORA10B Gene

Gene Ontology (GO) - Cellular Components for SNORA10B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA10B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA10B Gene

Pathways & Interactions for SNORA10B Gene

PathCards logo

SuperPathways for SNORA10B Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA10B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA10B: view

No data available for Pathways by source and SIGNOR curated interactions for SNORA10B Gene

Drugs & Compounds for SNORA10B Gene

No Compound Related Data Available

Transcripts for SNORA10B Gene

mRNA/cDNA for SNORA10B Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) Rfam transcripts :
(1) snOPY transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA10B Gene

No ASD Table

Relevant External Links for SNORA10B Gene

GeneLoc Exon Structure for
SNORA10B
ECgene alternative splicing isoforms for
SNORA10B

Expression for SNORA10B Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA10B Gene

Orthologs for SNORA10B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA10B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA64 33
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA64 33
  • 82 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SNORA64 33 33
  • 79 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORA64 33
  • 53 (a)
OneToMany
Species where no ortholog for SNORA10B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA10B Gene

ENSEMBL:
Gene Tree for SNORA10B (if available)
TreeFam:
Gene Tree for SNORA10B (if available)

Paralogs for SNORA10B Gene

No data available for Paralogs for SNORA10B Gene

Variants for SNORA10B Gene

Sequence variations from dbSNP and Humsavar for SNORA10B Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1003008674 -- 30,185,853(+) C/T upstream_transcript_variant
rs1003711605 -- 30,186,565(+) G/A upstream_transcript_variant
rs1004138343 -- 30,186,211(+) G/A upstream_transcript_variant
rs1004190629 -- 30,186,468(+) T/C upstream_transcript_variant
rs1004217108 -- 30,185,604(+) C/T upstream_transcript_variant

Additional Variant Information for SNORA10B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA10B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA10B Gene

Disorders for SNORA10B Gene

Additional Disease Information for SNORA10B

No disorders were found for SNORA10B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA10B Gene

Publications for SNORA10B Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3 56

No data available for External Links for SNORA10B Gene

Products for SNORA10B Gene

Sources for SNORA10B Gene