SNORA108 Gene (RNA Gene)

Small Nucleolar RNA, H/ACA Box 108

GC18P058601
GIFtS:
11

Aliases for SNORA108 Gene

Subcategory (RNA class) for SNORA108 Gene

snoRNA

Quality Score for this RNA gene is

12

Aliases for SNORA108 Gene

  • Small Nucleolar RNA, H/ACA Box 108 2 3 5
  • SNORA108 2

External Ids for SNORA108 Gene

Previous GeneCards Identifiers for SNORA108 Gene

  • GC00U936361
  • GC18U901164

Summaries for SNORA108 Gene

GeneCards Summary for SNORA108 Gene

SNORA108 (Small Nucleolar RNA, H/ACA Box 108) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA108 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SNORA108 Gene

Genomics for SNORA108 Gene

GeneHancer (GH) Regulatory Elements for SNORA108 Gene

Promoters and enhancers for SNORA108 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J058599 Enhancer 0.8 Ensembl ENCODE dbSUPER 750.6 -0.2 -225 1.2 SP1 RXRA FOS HNF4A JUND HNF4G SNORA108 piR-50444-202 ALPK2
GH18J058598 Enhancer 0.6 Ensembl ENCODE dbSUPER 750.6 -1.4 -1380 0.9 PRDM1 SNORA108 piR-50444-202 ALPK2
GH18J058667 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.7 +69.9 69860 6.2 SIN3A ZNF24 SP1 CTCF POLR2A ETV6 HLF NKRF ELF3 AHR MALT1 LOC101927322 SNORA108 ENSG00000275418 LOC102724745 ENSG00000267476 LOC105372146
GH18J058625 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.1 +27.3 27319 4.3 PKNOX1 ZIC2 CEBPA GATAD2A SCRT2 ZNF580 ZSCAN18 ZNF335 SMAD4 FEZF1 ALPK2 SNORA108 ZNF532
GH18J058575 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.8 -21.8 -21809 6.8 SIN3A USF2 NR2F6 ZNF133 SP1 MAFK CEBPG POLR2A RXRA PRDM10 lnc-RAX-6 MALT1 SNORA108 ALPK2 lnc-RAX-7 ENSG00000267579
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA108 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORA108 Gene

Genomic Locations for SNORA108 Gene
chr18:58,600,620-58,600,750
(GRCh38/hg38)
Size:
131 bases
Orientation:
Plus strand
chr18:56,267,863-56,267,930
(GRCh37/hg19)
Size:
68 bases
Orientation:
Plus strand

Genomic View for SNORA108 Gene

Genes around SNORA108 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA108 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA108 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORA108 Gene

Proteins for SNORA108 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORA108 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA108 Gene

Domains & Families for SNORA108 Gene

Gene Families for SNORA108 Gene

HGNC:
genes like me logo Genes that share domains with SNORA108: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA108 Gene

Function for SNORA108 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SNORA108 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA108 Gene

Localization for SNORA108 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA108 Gene

Pathways & Interactions for SNORA108 Gene

PathCards logo

SuperPathways for SNORA108 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA108 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA108 Gene

Drugs & Compounds for SNORA108 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORA108 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORA108 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA108 Gene

No ASD Table

Relevant External Links for SNORA108 Gene

GeneLoc Exon Structure for
SNORA108
ECgene alternative splicing isoforms for
SNORA108

Expression for SNORA108 Gene

Products:

  1. Primer
  2. Gene Expression Assay

NURSA nuclear receptor signaling pathways regulating expression of SNORA108 Gene:

SNORA108
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA108 Gene

Orthologs for SNORA108 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORA108 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORD28 33
  • 100 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia SNORD28 33
  • 68 (a)
 ManyToMany
platypus
(Ornithorhynchus anatinus)
 Mammalia SNORD28 33
  • 59 (a)
 OneToMany
oppossum
(Monodelphis domestica)
 Mammalia SNORD28 33
  • 58 (a)
 OneToMany
Species where no ortholog for SNORA108 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA108 Gene

ENSEMBL:
Gene Tree for SNORA108 (if available)
TreeFam:
Gene Tree for SNORA108 (if available)

Paralogs for SNORA108 Gene

No data available for Paralogs for SNORA108 Gene

Variants for SNORA108 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for SNORA108 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000821722 -- 58,600,696(+) G/A non_coding_transcript_variant
rs1000960056 -- 58,598,719(+) G/A upstream_transcript_variant
rs1003677759 -- 58,600,300(+) G/T upstream_transcript_variant
rs1004349614 -- 58,599,116(+) G/A upstream_transcript_variant
rs1005616142 -- 58,600,640(+) T/G non_coding_transcript_variant

Additional Variant Information for SNORA108 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA108

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA108 Gene

Disorders for SNORA108 Gene

Additional Disease Information for SNORA108

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORA108 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA108 Gene

Publications for SNORA108 Gene

  1. The coilin interactome identifies hundreds of small noncoding RNAs that traffic through Cajal bodies. (PMID: 25514182) Machyna M … Neugebauer KM (Molecular cell 2014) 2 3 56

No data available for External Links for SNORA108 Gene

Products for SNORA108 Gene

Sources for SNORA108 Gene