Aliases for SNORA10 Gene

Subcategory (RNA class) for SNORA10 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for SNORA10 Gene

  • Small Nucleolar RNA, H/ACA Box 10 2 3 5
  • SNORA10 2 176
  • ACA10 Small Nucleolar RNA Within Ribosomal Protein 2 Host 3
  • ACA10 SnoRNA 3
  • SNORA10A 3
  • RF00264 174
  • ACA10 3

External Ids for SNORA10 Gene

Previous GeneCards Identifiers for SNORA10 Gene

  • GC16M001957
  • GC16M002015
  • GC16M002017
  • GC16M002021
  • GC16M002023
  • GC16M002025
  • GC16M002033
  • GC16M002038
  • GC16M001969
  • GC16M001976
  • GC16M002105
  • GC16M002120
  • GC16M001985
  • GC16M002008
  • GC16M002048
  • GC16M002057
  • GC16M002067
  • GC16M002073
  • GC16M002085
  • GC16M002093

Summaries for SNORA10 Gene

GeneCards Summary for SNORA10 Gene

SNORA10 (Small Nucleolar RNA, H/ACA Box 10) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORA10 Gene

  • Small nucleolar RNA SNORA64/SNORA10 family

Additional gene information for SNORA10 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA10 Gene

Genomics for SNORA10 Gene

GeneHancer (GH) Regulatory Elements for SNORA10 Gene

Promoters and enhancers for SNORA10 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J001958 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 -0.1 -135 8 SIN3A ZNF24 ZBTB40 SP1 CTCF SREBF1 SIX5 ZBTB6 RBPJ SMARCE1 ENSG00000255513 SNORA64 RPS2 NDUFB10 NONHSAG018290.2 SNORA10 lnc-RPL3L-3 ENSG00000261505 TELO2 CRAMP1
GH16J001858 Enhancer 0.3 Ensembl 11.8 +103.5 103465 0.4 MAFK ZSCAN5C FAHD1 HAGH MEIOB HS3ST6 NDUFB10 SNORA10 SNORA64 RPS2 SNHG9 IGFALS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA10 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA10 gene promoter:
  • AP-4
  • c-Ets-1
  • MAZR
  • NF-1
  • NF-1/L
  • NF-kappaB1
  • Pax-5
  • SRF
  • SRF (504 AA)

Genomic Locations for SNORA10 Gene

Genomic Locations for SNORA10 Gene
chr16:1,962,334-1,962,466
(GRCh38/hg38)
Size:
133 bases
Orientation:
Minus strand
chr16:2,012,335-2,012,467
(GRCh37/hg19)
Size:
133 bases
Orientation:
Minus strand

Genomic View for SNORA10 Gene

Genes around SNORA10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA10 Gene

Proteins for SNORA10 Gene

Post-translational modifications for SNORA10 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA10 Gene

Domains & Families for SNORA10 Gene

Gene Families for SNORA10 Gene

genes like me logo Genes that share domains with SNORA10: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA10 Gene

Function for SNORA10 Gene

Phenotypes From GWAS Catalog for SNORA10 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA10 Gene

Localization for SNORA10 Gene

Gene Ontology (GO) - Cellular Components for SNORA10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA10: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORA10 Gene

Pathways & Interactions for SNORA10 Gene

PathCards logo

SuperPathways for SNORA10 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA10: view

No data available for Pathways by source and SIGNOR curated interactions for SNORA10 Gene

Drugs & Compounds for SNORA10 Gene

No Compound Related Data Available

Transcripts for SNORA10 Gene

mRNA/cDNA for SNORA10 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) ENA transcripts :
(1) Rfam transcripts :
(1) snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA10 Gene

No ASD Table

Relevant External Links for SNORA10 Gene

GeneLoc Exon Structure for
SNORA10
ECgene alternative splicing isoforms for
SNORA10

Expression for SNORA10 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA10 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA10 Gene:

SNORA10

SOURCE GeneReport for Unigene cluster for SNORA10 Gene:

Hs.679928
genes like me logo Genes that share expression patterns with SNORA10: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA10 Gene

Orthologs for SNORA10 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA10 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA64 33
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA64 33
  • 84 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SNORA64 33 33
  • 80 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORA64 33
  • 53 (a)
OneToMany
Species where no ortholog for SNORA10 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA10 Gene

ENSEMBL:
Gene Tree for SNORA10 (if available)
TreeFam:
Gene Tree for SNORA10 (if available)

Paralogs for SNORA10 Gene

No data available for Paralogs for SNORA10 Gene

Variants for SNORA10 Gene

Sequence variations from dbSNP and Humsavar for SNORA10 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000994330 -- 1,963,995(-) G/A upstream_transcript_variant
rs1001274604 -- 1,963,822(-) C/G/T upstream_transcript_variant
rs1003181864 -- 1,962,554(-) C/T upstream_transcript_variant
rs1003900492 -- 1,964,001(-) A/G upstream_transcript_variant
rs1004016496 -- 1,963,026(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA10 Gene

Variant ID Type Subtype PubMed ID
dgv4858n54 CNV loss 21841781
esv2422427 CNV duplication 17116639
nsv1160329 CNV deletion 26073780
nsv471070 CNV gain 18288195
nsv571179 CNV loss 21841781
nsv833120 CNV loss 17160897
nsv952901 CNV deletion 24416366
nsv984249 CNV duplication 23825009

Additional Variant Information for SNORA10 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA10 Gene

Disorders for SNORA10 Gene

Additional Disease Information for SNORA10

No disorders were found for SNORA10 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA10 Gene

Publications for SNORA10 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 56
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 56
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 56

Products for SNORA10 Gene

Sources for SNORA10 Gene