Aliases for SNORA1 Gene

Subcategory (RNA class) for SNORA1 Gene

snoRNA

Number of RNA Genes sources:

4 / 17

Aliases for SNORA1 Gene

  • Small Nucleolar RNA, H/ACA Box 1 2 3 5
  • SNORA1 2 5 170
  • ACA1 2 3
  • SNODB189 177
  • RF00408 168

External Ids for SNORA1 Gene

Previous GeneCards Identifiers for SNORA1 Gene

  • GC11M093147
  • GC11M093154
  • GC11M093160
  • GC11M093166
  • GC11M093172
  • GC11M093182
  • GC11M093194
  • GC11M093202
  • GC11M093467
  • GC11M093473
  • GC11M089542
  • GC11M093481
  • GC11M093497
  • GC11M093504
  • GC11M093513
  • GC11M093523
  • GC11M093539
  • GC11M093563
  • GC11M093734
  • GC11M093745
  • GC11M093942
  • GC11M094031
  • GC11M094044
  • GC11M094222
  • GC11M093757
  • GC11M093767
  • GC11M093776
  • GC11M093785
  • GC11M093796
  • GC11M093807
  • GC11M093937
  • GC11M093923

Summaries for SNORA1 Gene

GeneCards Summary for SNORA1 Gene

SNORA1 (Small Nucleolar RNA, H/ACA Box 1) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORA1 include Acrodermatitis Chronica Atrophicans and Granulomatous Amebic Encephalitis.

Rfam classification for SNORA1 Gene

  • Small nucleolar RNA SNORA1

Additional gene information for SNORA1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA1 Gene

Genomics for SNORA1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORA1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORA1 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORA1 gene promoter:
  • aMEF-2
  • GATA-1
  • GR
  • MEF-2
  • MEF-2A
  • POU2F1
  • POU2F1a
  • RORalpha1

Genomic Locations for SNORA1 Gene

Genomic Locations for SNORA1 Gene
chr11:93,732,004-93,732,133
(GRCh38/hg38)
Size:
130 bases
Orientation:
Minus strand
chr11:93,465,170-93,465,299
(GRCh37/hg19)
Size:
130 bases
Orientation:
Minus strand

Genomic View for SNORA1 Gene

Genes around SNORA1 on UCSC Golden Path with GeneCards custom track
SNORA1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORA1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA1 Gene

Proteins for SNORA1 Gene

Post-translational modifications for SNORA1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA1 Gene

Domains & Families for SNORA1 Gene

Gene Families for SNORA1 Gene

genes like me logo Genes that share domains with SNORA1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORA1 Gene

Function for SNORA1 Gene

Phenotypes From GWAS Catalog for SNORA1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA1 Gene

Localization for SNORA1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA1 gene
Compartment Confidence
plasma membrane 1
extracellular 1
cytoskeleton 1
mitochondrion 1
nucleus 1
cytosol 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for SNORA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORA1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORA1 Gene

Pathways & Interactions for SNORA1 Gene

PathCards logo

SuperPathways for SNORA1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORA1: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORA1 Gene

Drugs & Compounds for SNORA1 Gene

No Compound Related Data Available

Transcripts for SNORA1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORA1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004ACFCF_9606 snoRNA 130 7

HGNC: 32557,

RefSeq: NR_003026,

Ensembl: ENST00000384107 (view in UCSC) ,

Rfam: RF00408,

snoDB: SNODB189,

snOPY: Homo_sapiens300749,

ENA: AJ609425.1:1..130:ncRNA,

SNORA1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNORA1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA1 Gene

No ASD Table

Relevant External Links for SNORA1 Gene

GeneLoc Exon Structure for
SNORA1

Expression for SNORA1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORA1

SOURCE GeneReport for Unigene cluster for SNORA1 Gene:

Hs.689724
genes like me logo Genes that share expression patterns with SNORA1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA1 Gene

Orthologs for SNORA1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA1 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORA1 31
  • 100 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm22620 31
  • 83 (a)
OneToMany
Dog
(Canis familiaris)
Mammalia SNORA1 31
  • 82 (a)
ManyToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORA1 31
  • 71 (a)
OneToMany
Oppossum
(Monodelphis domestica)
Mammalia SNORA1 31
  • 69 (a)
OneToMany
Cow
(Bos Taurus)
Mammalia SNORA1 31
  • 66 (a)
ManyToMany
Chicken
(Gallus gallus)
Aves SNORA1 31
  • 62 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia SNORA1 31
  • 64 (a)
OneToMany
Zebrafish
(Danio rerio)
Actinopterygii SNORA1 31
  • 56 (a)
OneToMany
Species where no ortholog for SNORA1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORA1 Gene

ENSEMBL:
Gene Tree for SNORA1 (if available)
TreeFam:
Gene Tree for SNORA1 (if available)

Paralogs for SNORA1 Gene

No data available for Paralogs for SNORA1 Gene

Variants for SNORA1 Gene

Additional dbSNP identifiers (rs#s) for SNORA1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA1 Gene

Variant ID Type Subtype PubMed ID
esv3627294 CNV gain 21293372
nsv832232 CNV gain 17160897

Additional Variant Information for SNORA1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORA1 Gene

Disorders for SNORA1 Gene

MalaCards: The human disease database

(5) MalaCards diseases for SNORA1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
acrodermatitis chronica atrophicans
  • herxheimer disease
granulomatous amebic encephalitis
  • acanthamoeba encephalitis
primary amebic meningoencephalitis
  • naegleria fowleri infection
acrodermatitis
tracheal stenosis
  • stenosis of trachea
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORA1

genes like me logo Genes that share disorders with SNORA1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORA1 Gene

Publications for SNORA1 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORA1 Gene

Sources for SNORA1 Gene