Aliases for SNHG9 Gene

Subcategory (RNA class) for SNHG9 Gene


Quality Score for this RNA gene is


Aliases for SNHG9 Gene

  • Small Nucleolar RNA Host Gene 9 2 3 5
  • Small Nucleolar RNA Host Gene 9 (Non-Protein Coding) 2 3
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 9 3
  • Non-Protein Coding RNA 62 2
  • NONHSAG018293 94
  • HSALNG0108960 169
  • NCRNA00062 3
  • SNHG9 170

External Ids for SNHG9 Gene

Previous GeneCards Identifiers for SNHG9 Gene

  • GC16U900600
  • GC16P001954
  • GC16P002018
  • GC16P002020
  • GC16P002021
  • GC16P002025
  • GC16P002029
  • GC16P002048
  • GC16P002055
  • GC16P002079
  • GC16P002093
  • GC16P002114
  • GC16P001977
  • GC16P001985
  • GC16P002278
  • GC16P002313
  • GC16P001991
  • GC16P001998
  • GC16P002007
  • GC16P002130
  • GC16P002158
  • GC16P002163
  • GC16P002197
  • GC16P002229

Summaries for SNHG9 Gene

GeneCards Summary for SNHG9 Gene

SNHG9 (Small Nucleolar RNA Host Gene 9) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for SNHG9 Gene

  • Small nucleolar RNA ACA64

Additional gene information for SNHG9 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNHG9 Gene

Genomics for SNHG9 Gene

GeneHancer (GH) Regulatory Elements for SNHG9 Gene

Promoters and enhancers for SNHG9 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNHG9 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNHG9 gene promoter:
  • c-Ets-1
  • MAZR
  • MyoD
  • NF-1
  • NF-1/L
  • NF-kappaB1
  • Pax-5
  • SRF
  • SRF (504 AA)

Genomic Locations for SNHG9 Gene

Genomic Locations for SNHG9 Gene
789 bases
Plus strand
551 bases
Plus strand

Genomic View for SNHG9 Gene

Genes around SNHG9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG9 Gene

Proteins for SNHG9 Gene

No data available for DME Specific Peptides for SNHG9 Gene

Domains & Families for SNHG9 Gene

Gene Families for SNHG9 Gene

genes like me logo Genes that share domains with SNHG9: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNHG9 Gene

Function for SNHG9 Gene

Phenotypes From GWAS Catalog for SNHG9 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG9 Gene

Localization for SNHG9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG9 Gene

Pathways & Interactions for SNHG9 Gene

PathCards logo

SuperPathways for SNHG9 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNHG9 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNHG9 Gene

Drugs & Compounds for SNHG9 Gene

No Compound Related Data Available

Transcripts for SNHG9 Gene

mRNA/cDNA for SNHG9 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) NONCODE transcripts :
(11) RNACentral transcripts :
(6) LncBook transcripts :
(10) LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG9 Gene

No ASD Table

Relevant External Links for SNHG9 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNHG9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG9 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG9 Gene:


SOURCE GeneReport for Unigene cluster for SNHG9 Gene:

genes like me logo Genes that share expression patterns with SNHG9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG9 Gene

Orthologs for SNHG9 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNHG9 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ACA64 33
  • 99 (a)
(Canis familiaris)
Mammalia ACA64 33
  • 87 (a)
(Mus musculus)
Mammalia Snora78 33
  • 84 (a)
(Bos Taurus)
Mammalia ACA64 33
  • 84 (a)
(Ornithorhynchus anatinus)
Mammalia ACA64 33 33
  • 74 (a)
(Monodelphis domestica)
Mammalia ACA64 33
  • 69 (a)
(Gallus gallus)
Aves ACA64 33
  • 61 (a)
(Anolis carolinensis)
Reptilia ACA64 33
  • 58 (a)
(Danio rerio)
Actinopterygii ACA64 33 33
  • 51 (a)
Species where no ortholog for SNHG9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNHG9 Gene

Gene Tree for SNHG9 (if available)
Gene Tree for SNHG9 (if available)

Paralogs for SNHG9 Gene

No data available for Paralogs for SNHG9 Gene

Variants for SNHG9 Gene

Sequence variations from dbSNP and Humsavar for SNHG9 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000994330 -- 1,963,995(+) G/A upstream_transcript_variant
rs1001274604 -- 1,963,822(+) C/G/T upstream_transcript_variant
rs1001755957 -- 1,964,845(+) G/A upstream_transcript_variant
rs1003786438 -- 1,964,877(+) T/A upstream_transcript_variant
rs1003892482 -- 1,965,717(+) C/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNHG9 Gene

Variant ID Type Subtype PubMed ID
dgv336n27 CNV loss 19166990
dgv4858n54 CNV loss 21841781
esv2422427 CNV duplication 17116639
nsv1160329 CNV deletion 26073780
nsv471070 CNV gain 18288195
nsv571179 CNV loss 21841781
nsv833120 CNV loss 17160897
nsv952901 CNV deletion 24416366
nsv984249 CNV duplication 23825009

Additional Variant Information for SNHG9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG9 Gene

Disorders for SNHG9 Gene

Additional Disease Information for SNHG9

No disorders were found for SNHG9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG9 Gene

Publications for SNHG9 Gene

  1. Long non-coding RNA LINC00346, LINC00578, LINC00673, LINC00671, LINC00261, and SNHG9 are novel prognostic markers for pancreatic cancer. (PMID: 30210701) Zhang B … Sun Z (American journal of translational research 2018) 2 3 56

Products for SNHG9 Gene

Sources for SNHG9 Gene