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Aliases for SNHG7 Gene

Subcategory (RNA class) for SNHG7 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG7 Gene

  • Small Nucleolar RNA Host Gene 7 2 3 5
  • Small Nucleolar RNA Host Gene 7 (Non-Protein Coding) 2 3
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 7 3
  • Non-Protein Coding RNA 61 2
  • NCRNA00061 3

External Ids for SNHG7 Gene

Previous GeneCards Identifiers for SNHG7 Gene

  • GC09U900761
  • GC09M139615
  • GC09M109078

Summaries for SNHG7 Gene

GeneCards Summary for SNHG7 Gene

SNHG7 (Small Nucleolar RNA Host Gene 7) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNHG7 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG7 Gene

Genomics for SNHG7 Gene

GeneHancer (GH) Regulatory Elements for SNHG7 Gene

Promoters and enhancers for SNHG7 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I136725 Promoter/Enhancer 1.6 Ensembl ENCODE 631.9 +0.7 736 4.1 CLOCK MLX DMAP1 IRF4 YY1 ZNF213 ZNF143 SP3 NFYC SSRP1 SNHG7 ENSG00000281808 GC09M136753 GC09M136755 GC09M136756 SNORA17A SNORA17B DPH7 EHMT1 ANAPC2
GH09I135967 Enhancer 1.3 Ensembl ENCODE 81 +760.6 760552 1.1 HDGF PKNOX1 ARNT ARID4B SIN3A ZNF2 ZBTB7B IRF4 ZNF302 E2F8 SDCCAG3 SNHG7 INPP5E SEC16A OLFM1 LCN6 LCN10 QSOX2 ENSG00000238058 AJM1
GH09I137025 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 32.5 -302.4 -302405 10.8 HDGF PKNOX1 CLOCK ARID4B NEUROD1 SIN3A ZNF2 ZBTB7B IRF4 ZNF766 FUT7 ABCA2 SNHG7 EHMT1 SEC16A SDCCAG3 DPH7 ANAPC2 NDOR1 MAN1B1-AS1
GH09I137233 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 26 -510.1 -510122 9.9 CLOCK MLX FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF416 ZNF143 SP3 TUBB4B EHMT1 SDCCAG3 ANAPC2 NDOR1 DPH7 INPP5E LOC651337 MAN1B1 SNHG7
GH09I137610 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 26.8 -887.4 -887380 10.5 HDGF PKNOX1 CLOCK ARID4B NEUROD1 SIN3A DMAP1 ZBTB7B YY1 POLR2B EHMT1 ANAPC2 DPH7 SNHG7 LOC651337 EXD3 MAN1B1 ZMYND19 ARRDC1-AS1 ARRDC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNHG7 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNHG7 gene promoter:

Genomic Locations for SNHG7 Gene

Genomic Locations for SNHG7 Gene
chr9:136,721,366-136,728,184
(GRCh38/hg38)
Size:
6,819 bases
Orientation:
Minus strand
chr9:139,615,818-139,622,636
(GRCh37/hg19)

Genomic View for SNHG7 Gene

Genes around SNHG7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG7 Gene

Proteins for SNHG7 Gene

Post-translational modifications for SNHG7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG7 Gene

Domains & Families for SNHG7 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG7 Gene

Function for SNHG7 Gene

Phenotypes From GWAS Catalog for SNHG7 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG7 Gene

Localization for SNHG7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG7 Gene

Pathways & Interactions for SNHG7 Gene

SuperPathways for SNHG7 Gene

No Data Available

Interacting Proteins for SNHG7 Gene

Gene Ontology (GO) - Biological Process for SNHG7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG7 Gene

Drugs & Compounds for SNHG7 Gene

No Compound Related Data Available

Transcripts for SNHG7 Gene

mRNA/cDNA for SNHG7 Gene

(15) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG7 Gene

Small nucleolar RNA host gene 7 (non-protein coding):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG7 Gene

No ASD Table

Relevant External Links for SNHG7 Gene

GeneLoc Exon Structure for
SNHG7
ECgene alternative splicing isoforms for
SNHG7

Expression for SNHG7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG7 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG7 Gene:

SNHG7

SOURCE GeneReport for Unigene cluster for SNHG7 Gene:

Hs.495480
genes like me logo Genes that share expression patterns with SNHG7: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG7 Gene

Orthologs for SNHG7 Gene

Evolution for SNHG7 Gene

ENSEMBL:
Gene Tree for SNHG7 (if available)
TreeFam:
Gene Tree for SNHG7 (if available)

No data available for Orthologs for SNHG7 Gene

Paralogs for SNHG7 Gene

No data available for Paralogs for SNHG7 Gene

Variants for SNHG7 Gene

Sequence variations from dbSNP and Humsavar for SNHG7 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000082088 -- 136,724,284(-) C/T downstream_transcript_variant
rs1000640987 -- 136,728,204(-) C/A upstream_transcript_variant
rs1001324524 -- 136,729,825(-) C/T upstream_transcript_variant
rs1001474965 -- 136,725,756(-) A/G intron_variant, non_coding_transcript_variant
rs1001476974 -- 136,728,116(-) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNHG7 Gene

Variant ID Type Subtype PubMed ID
dgv13006n54 CNV loss 21841781
dgv957n27 CNV loss 19166990
esv2422220 CNV deletion 17116639
esv2759720 CNV loss 17122850
esv3891732 CNV loss 25118596
nsv469918 CNV loss 18288195
nsv509334 CNV insertion 20534489
nsv6769 CNV insertion 18451855
nsv7436 OTHER inversion 18451855
nsv8579 CNV gain 18304495
nsv951203 CNV deletion 24416366

Additional Variant Information for SNHG7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG7

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG7 Gene

Disorders for SNHG7 Gene

Additional Disease Information for SNHG7

No disorders were found for SNHG7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG7 Gene

Publications for SNHG7 Gene

  1. lncRNA-SNHG7 promotes the proliferation, migration and invasion and inhibits apoptosis of lung cancer cells by enhancing the FAIM2 expression. (PMID: 27666964) She K … He J (Oncology reports 2016) 2 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Long noncoding RNA SNHG7 promotes the progression and growth of glioblastoma via inhibition of miR-5095. (PMID: 29360452) Ren J … Sun Q (Biochemical and biophysical research communications 2018) 3

Products for SNHG7 Gene

Sources for SNHG7 Gene

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