Aliases for SNHG29 Gene

Subcategory (RNA class) for SNHG29 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for SNHG29 Gene

  • Small Nucleolar RNA Host Gene 29 2 3 5
  • C17orf76 Antisense RNA 1 (Non-Protein Coding) 2 3
  • FAM211A Antisense RNA 1 2 3
  • LRRC75A Antisense RNA 1 2 3
  • LRRC75A-AS1 3 168
  • Chromosome 17 Open Reading Frame 45 2
  • Non-Protein Coding RNA 188 2
  • C17orf76 Antisense RNA 1 2
  • NONHSAG020957 92
  • HSALNG0114857 167
  • C17orf76-AS1 3
  • FAM211A-AS1 3
  • NCRNA00188 3
  • C17orf45 3
  • TSAP19 3
  • SNHG29 2

External Ids for SNHG29 Gene

Previous HGNC Symbols for SNHG29 Gene

  • C17orf45
  • NCRNA00188
  • C17orf76-AS1
  • FAM211A-AS1
  • LRRC75A-AS1

Previous GeneCards Identifiers for SNHG29 Gene

  • GC17P016470
  • GC17P016471
  • GC17P016466
  • GC17P016468

Summaries for SNHG29 Gene

GeneCards Summary for SNHG29 Gene

SNHG29 (Small Nucleolar RNA Host Gene 29) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SNHG29 include Rheumatoid Arthritis.

Rfam classification for SNHG29 Gene

  • Small nucleolar RNA SNORD49
  • Small nucleolar RNA SNORD65

Additional gene information for SNHG29 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNHG29 Gene

Genomics for SNHG29 Gene

GeneHancer (GH) Regulatory Elements for SNHG29 Gene

Promoters and enhancers for SNHG29 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNHG29 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNHG29 Gene

Genomic Locations for SNHG29 Gene
chr17:16,438,767-16,478,678
(GRCh38/hg38)
Size:
39,912 bases
Orientation:
Plus strand
chr17:16,342,136-16,381,992
(GRCh37/hg19)
Size:
39,857 bases
Orientation:
Plus strand

Genomic View for SNHG29 Gene

Genes around SNHG29 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG29 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG29 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG29 Gene

Proteins for SNHG29 Gene

Post-translational modifications for SNHG29 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG29 Gene

Domains & Families for SNHG29 Gene

Gene Families for SNHG29 Gene

Suggested Antigen Peptide Sequences for SNHG29 Gene

GenScript: Design optimal peptide antigens:
  • C17orf45 protein (Q8WUR1_HUMAN)
  • C17orf45 protein (Q96EF2_HUMAN)
genes like me logo Genes that share domains with SNHG29: view

No data available for Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNHG29 Gene

Function for SNHG29 Gene

Phenotypes From GWAS Catalog for SNHG29 Gene

genes like me logo Genes that share phenotypes with SNHG29: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SNHG29

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG29 Gene

Localization for SNHG29 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNHG29 gene
Compartment Confidence
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG29 Gene

Pathways & Interactions for SNHG29 Gene

PathCards logo

SuperPathways for SNHG29 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNHG29 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNHG29 Gene

Drugs & Compounds for SNHG29 Gene

No Compound Related Data Available

Transcripts for SNHG29 Gene

mRNA/cDNA for SNHG29 Gene

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SNHG29

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG29 Gene

No ASD Table

Relevant External Links for SNHG29 Gene

GeneLoc Exon Structure for
SNHG29

Expression for SNHG29 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNHG29

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG29 Gene

Orthologs for SNHG29 Gene

Evolution for SNHG29 Gene

ENSEMBL:
Gene Tree for SNHG29 (if available)
TreeFam:
Gene Tree for SNHG29 (if available)

No data available for Orthologs for SNHG29 Gene

Paralogs for SNHG29 Gene

No data available for Paralogs for SNHG29 Gene

Variants for SNHG29 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for SNHG29 Gene

SNP ID Clinical significance and condition Chr 17 pos Variation AA Info Type
788905 Benign: not provided 16,443,931(+) C/T MISSENSE_VARIANT,SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for SNHG29 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNHG29 Gene

Variant ID Type Subtype PubMed ID
esv2715702 CNV deletion 23290073
esv3640102 CNV gain 21293372
esv3640103 CNV gain 21293372
nsv1063764 CNV loss 25217958
nsv1063941 CNV gain 25217958

Additional Variant Information for SNHG29 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG29

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG29 Gene

Disorders for SNHG29 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNHG29 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
rheumatoid arthritis
  • ra
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with SNHG29: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for SNHG29 Gene

Publications for SNHG29 Gene

  1. A three‑lncRNA signature for prognosis prediction of acute myeloid leukemia in patients. (PMID: 29901168) Wang F … Liang A (Molecular medicine reports 2018) 2 3 54
  2. Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis. (PMID: 27716329) Zhang Y … Li XJ (Arthritis research & therapy 2016) 2 3 54
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 54
  4. A directed protein interaction network for investigating intracellular signal transduction. (PMID: 21900206) Vinayagam A … Wanker EE (Science signaling 2011) 3 54
  5. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K … Gorospe M (The EMBO journal 2009) 3 54

Products for SNHG29 Gene

Sources for SNHG29 Gene