Aliases for SNHG25 Gene

Subcategory (RNA class) for SNHG25 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for SNHG25 Gene

  • Small Nucleolar RNA Host Gene 25 2 3 5
  • SNHG25 5 165
  • NONHSAG022495.2 91
  • HSALNG0118080 164

External Ids for SNHG25 Gene

Previous GeneCards Identifiers for SNHG25 Gene

  • GC00U936413

Summaries for SNHG25 Gene

GeneCards Summary for SNHG25 Gene

SNHG25 (Small Nucleolar RNA Host Gene 25) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for SNHG25 Gene

  • Small nucleolar RNA SNORA76
  • Small nucleolar RNA SNORD104

Additional gene information for SNHG25 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNHG25 Gene

Genomics for SNHG25 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNHG25 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J064144 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.9 945 5 CEBPG SP1 HNRNPL CREB1 GATAD2A ATF7 TEAD4 PRDM10 ZNF629 REST ENSG00000281311 SNHG25 SNORA50C SNORD104 CEP95 POLG2 DDX42 SLC16A6P1 SMARCD2 FTSJ3
GH17J064145 Enhancer 0.2 ENCODE 600.7 -1.7 -1661 0.1 SNHG25 SNORD104 piR-34582-004 ERN1 TEX2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNHG25 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNHG25 Gene

Genomic Locations for SNHG25 Gene
chr17:64,145,970-64,147,434
(GRCh38/hg38)
Size:
1,465 bases
Orientation:
Plus strand

Genomic View for SNHG25 Gene

Genes around SNHG25 on UCSC Golden Path with GeneCards custom track
SNHG25 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNHG25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG25 Gene

Proteins for SNHG25 Gene

Post-translational modifications for SNHG25 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG25 Gene

Domains & Families for SNHG25 Gene

Gene Families for SNHG25 Gene

genes like me logo Genes that share domains with SNHG25: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNHG25 Gene

Function for SNHG25 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG25 Gene

Localization for SNHG25 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG25 Gene

Pathways & Interactions for SNHG25 Gene

PathCards logo

SuperPathways for SNHG25 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNHG25 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNHG25 Gene

Drugs & Compounds for SNHG25 Gene

No Compound Related Data Available

Transcripts for SNHG25 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNHG25 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000F1597_9606 lncRNA 278 3

Ensembl: ENST00000582965 (view in UCSC) ,

LncBook: HSALNT0243784, HSALNT0243785, HSALNT0243786,

LNCipedia: SNHG25:3, SNHG25:6,

URS00004855ED_9606 lncRNA 106 1

Ensembl: ENST00000580828 (view in UCSC) ,

URS00008B89CA_9606 lncRNA 1226 2

LNCipedia: SNHG25:4,

NONCODE: NONHSAT055273.2,

URS0000D5C530_9606 lncRNA 502 1

LNCipedia: SNHG25:5,

SNHG25 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNHG25 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG25 Gene

No ASD Table

Relevant External Links for SNHG25 Gene

GeneLoc Exon Structure for
SNHG25

Expression for SNHG25 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG25 Gene

Orthologs for SNHG25 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNHG25 Gene

Organism Taxonomy Gene Similarity Type Details
Dog
(Canis familiaris)
Mammalia SNORA76 31
  • 86 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm22711 31
  • 81 (a)
OneToOne
Chimpanzee
(Pan troglodytes)
Mammalia SNORA76 31
  • 80 (a)
ManyToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORA76 31
  • 60 (a)
OneToMany
Species where no ortholog for SNHG25 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for SNHG25 Gene

ENSEMBL:
Gene Tree for SNHG25 (if available)
TreeFam:
Gene Tree for SNHG25 (if available)

Paralogs for SNHG25 Gene

No data available for Paralogs for SNHG25 Gene

Variants for SNHG25 Gene

Additional dbSNP identifiers (rs#s) for SNHG25 Gene

Additional Variant Information for SNHG25 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG25

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNHG25 Gene

Disorders for SNHG25 Gene

No disorders were found for SNHG25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG25 Gene

Publications for SNHG25 Gene

  1. Fine expression profiling of full-length transcripts using a size-unbiased cDNA library prepared with the vector-capping method. (PMID: 18487259) Oshikawa M … Kato S (DNA research : an international journal for rapid publication of reports on genes and genomes 2008) 3
  2. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3

Products for SNHG25 Gene

Sources for SNHG25 Gene