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Aliases for SNHG20 Gene
Data sources for SNHG20 Gene:
Subcategory (RNA class) for SNHG20 Gene
lncRNA
Aliases for SNHG20 Gene
- Small Nucleolar RNA Host Gene 20 (HGNC, NCBI Entrez Gene, Ensembl)
- Small Nucleolar RNA Host Gene 20 (Non-Protein Coding) (HGNC, NCBI Entrez Gene)
- Long Intergenic Non-Protein Coding RNA 338 (HGNC, NCBI Entrez Gene)
- SCARNA16HG (HGNC, NCBI Entrez Gene)
- SNHG20 (Ensembl, LNCipedia)
- Chromosome 17 Open Reading Frame 86 (HGNC)
- Non-Protein Coding RNA 338 (HGNC)
- NONHSAG022845.2 (NONCODE)
- DKFZp686L05235 (HGNC)
- HSALNG0118895 (LncBook)
- NCRNA00338 (NCBI Entrez Gene)
- LINC00338 (NCBI Entrez Gene)
- C17orf86 (NCBI Entrez Gene)
- FLJ25582 (HGNC)
- PRO0872 (HGNC)
External Ids for SNHG20 Gene
- HGNC: 33099
- NCBI Entrez Gene: 654434
- Ensembl: ENSG00000234912
Previous HGNC Symbols for SNHG20 Gene
- C17orf86
- NCRNA00338
- LINC00338
Previous GeneCards Identifiers for SNHG20 Gene
- GC17P075102
Summaries for SNHG20 Gene
GeneCards Summary for SNHG20 Gene
SNHG20 (Small Nucleolar RNA Host Gene 20) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SNHG20 include Ovarian Cancer and Hepatocellular Carcinoma.
Rfam classification for SNHG20 Gene
-
Small Cajal body specific RNA 16
Additional gene information for SNHG20 Gene
- HGNC (33099)
- NCBI Entrez Gene (654434)
- Ensembl (ENSG00000234912)
- Open Targets Platform(ENSG00000234912)
- Search for SNHG20 at DataMed
- Search for SNHG20 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNHG20 Gene
Genomics for SNHG20 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SNHG20 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNHG20 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for SNHG20 Gene
Latest Assembly
- chr17:77,086,715-77,099,902
- (GRCh38/hg38)
- Size:
- 13,188 bases
- Orientation:
- Plus strand
Previous Assembly
- chr17:75,084,725-75,091,068
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 6,344 bases
- Orientation:
- Plus strand
- chr17:75,082,798-75,091,068
- (GRCh37/hg19 by Ensembl)
- Size:
- 8,271 bases
- Orientation:
- Plus strand
Genomic View for SNHG20 Gene
Genes around SNHG20 on UCSC Golden Path with GeneCards custom track
SNHG20 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 17q25.2 by HGNC
- 17q25.2 by Entrez Gene
- 17q25.2 by Ensembl
SNHG20 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNHG20 Gene
Proteins for SNHG20 Gene
Post-translational modifications for SNHG20 Gene
No Post-translational modifications
No data available for DME Specific Peptides for SNHG20 Gene
Domains & Families for SNHG20 Gene
Gene Families for SNHG20 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNHG20 Gene
Function for SNHG20 Gene
Phenotypes From GWAS Catalog for SNHG20 Gene
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNHG20 - Starting at $85 >
- * SNHG20 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
-
OriGene CRISPR knockouts for SNHG20
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for SNHG20 - Starting at $45 >
- * SNHG20 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG20 Gene
Localization for SNHG20 Gene
| Compartment | Confidence |
|---|---|
| extracellular | 1 |
| cytoskeleton | 1 |
| nucleus | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG20 Gene
Transcripts for SNHG20 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNHG20 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00008C0DB1_9606 | lncRNA | 1342 | 4 |
Ensembl: ENST00000566583 (view in UCSC) , LncBook: HSALNT0245551, LNCipedia: SNHG20:10, NONCODE: NONHSAT056112.2, |
| URS00008C35C2_9606 | lncRNA | 1234 | 4 |
Ensembl: ENST00000565256 (view in UCSC) , LncBook: HSALNT0245550, LNCipedia: SNHG20:8, NONCODE: NONHSAT056113.2, |
| URS00008BFB3C_9606 | lncRNA | 786 | 4 |
Ensembl: ENST00000568363 (view in UCSC) , LncBook: HSALNT0245539, LNCipedia: SNHG20:3, NONCODE: NONHSAT056104.2, |
| URS0000D56D3C_9606 | lncRNA | 806 | 3 |
Ensembl: ENST00000564509 (view in UCSC) , LncBook: HSALNT0245553, LNCipedia: SNHG20:9, |
| URS0000D5B94D_9606 | lncRNA | 603 | 3 |
Ensembl: ENST00000561633 (view in UCSC) , LncBook: HSALNT0245552, LNCipedia: SNHG20:11, |
SNHG20 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for SNHG20 Gene
- 17 NCBI additional mRNA sequence :
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNHG20 - Starting at $85 >
- * SNHG20 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
-
OriGene CRISPR knockouts for SNHG20
Inhibitory RNAs for research
Clone products for research
- Applied Biological Materials (abm): Clones for SNHG20 - Starting at $45 >
- * SNHG20 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Relevant External Links for SNHG20 Gene
- GeneLoc Exon Structure for
- SNHG20
Expression for SNHG20 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNHG20
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG20 Gene
Orthologs for SNHG20 Gene
No data available for Orthologs for SNHG20 Gene
Paralogs for SNHG20 Gene
No data available for Paralogs for SNHG20 Gene
Variants for SNHG20 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv5784n54 | CNV | gain | 21841781 |
| esv3554806 | CNV | deletion | 23714750 |
| esv3582914 | CNV | loss | 25503493 |
| esv3641304 | CNV | gain | 21293372 |
Additional Variant Information for SNHG20 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNHG20
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNHG20 Gene
Disorders for SNHG20 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| ovarian cancer |
|
|
| hepatocellular carcinoma |
|
|
| gastric cancer |
|
|
| lung cancer |
|
|
| colorectal cancer |
|
Search SNHG20 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for SNHG20
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No data available for UniProtKB/Swiss-Prot and Genatlas for SNHG20 Gene
Publications for SNHG20 Gene
- Up-regulation of LncRNA SNHG20 Predicts Poor Prognosis in Hepatocellular Carcinoma. (PMID: 27053960) Zhang D … Wu D (Journal of Cancer 2016) 2 3 74
- Up-regulation of long non-coding RNA SNHG20 promotes ovarian cancer progression via Wnt/β-catenin signaling. (PMID: 29101241) He S … Shen H (Bioscience reports 2018) 3 74
- Long non-coding RNA SNHG20 promotes non-small cell lung cancer cell proliferation and migration by epigenetically silencing of P21 expression. (PMID: 28981099) Chen Z … Wang Z (Cell death & disease 2017) 3 74
- Long non-coding RNA SNHG20 predicts a poor prognosis for HCC and promotes cell invasion by regulating the epithelial-to-mesenchymal transition. (PMID: 28282787) Liu J … Ni R (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2017) 2 3
- Increased long noncoding RNA SNHG20 predicts poor prognosis in colorectal cancer. (PMID: 27543107) Li C … Xiong MM (BMC cancer 2016) 3 74
ExternalLinks
Products for SNHG20 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNHG20
- Origene Custom Protein Services for SNHG20
- Browse OriGene Inhibitory RNA Products For SNHG20
- Browse OriGene qPCR primer pairs and template standards
- OriGene CRISPR knockouts for SNHG20
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNHG20
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNHG20
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNHG20
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNHG20
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNHG20
Sources for SNHG20 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB