Aliases for SNHG20 Gene

Subcategory (RNA class) for SNHG20 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for SNHG20 Gene

  • Small Nucleolar RNA Host Gene 20 2 3 5
  • SNHG20 2 5 165
  • Small Nucleolar RNA Host Gene 20 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 338 2 3
  • SCARNA16HG 2 3
  • Chromosome 17 Open Reading Frame 86 2
  • Non-Protein Coding RNA 338 2
  • NONHSAG022845.2 91
  • DKFZp686L05235 2
  • HSALNG0118895 164
  • NCRNA00338 3
  • LINC00338 3
  • C17orf86 3
  • FLJ25582 2
  • PRO0872 2

External Ids for SNHG20 Gene

Previous HGNC Symbols for SNHG20 Gene

  • C17orf86
  • NCRNA00338
  • LINC00338

Previous GeneCards Identifiers for SNHG20 Gene

  • GC17P075102

Summaries for SNHG20 Gene

GeneCards Summary for SNHG20 Gene

SNHG20 (Small Nucleolar RNA Host Gene 20) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SNHG20 include Ovarian Cancer and Hepatocellular Carcinoma.

Rfam classification for SNHG20 Gene

  • Small Cajal body specific RNA 16

Additional gene information for SNHG20 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNHG20 Gene

Genomics for SNHG20 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNHG20 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNHG20 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNHG20 Gene

Genomic Locations for SNHG20 Gene
chr17:77,086,716-77,099,902
(GRCh38/hg38)
Size:
13,187 bases
Orientation:
Plus strand
chr17:75,082,798-75,091,068
(GRCh37/hg19)
Size:
8,271 bases
Orientation:
Plus strand

Genomic View for SNHG20 Gene

Genes around SNHG20 on UCSC Golden Path with GeneCards custom track
SNHG20 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNHG20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG20 Gene

Proteins for SNHG20 Gene

Post-translational modifications for SNHG20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG20 Gene

Domains & Families for SNHG20 Gene

Gene Families for SNHG20 Gene

genes like me logo Genes that share domains with SNHG20: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNHG20 Gene

Function for SNHG20 Gene

Phenotypes From GWAS Catalog for SNHG20 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG20 Gene

Localization for SNHG20 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNHG20 gene
Compartment Confidence
extracellular 1
cytoskeleton 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG20 Gene

Pathways & Interactions for SNHG20 Gene

PathCards logo

SuperPathways for SNHG20 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNHG20 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNHG20 Gene

Drugs & Compounds for SNHG20 Gene

No Compound Related Data Available

Transcripts for SNHG20 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNHG20 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008C0DB1_9606 lncRNA 1338 4

Ensembl: ENST00000566583 (view in UCSC) ,

LncBook: HSALNT0245551,

LNCipedia: SNHG20:10,

NONCODE: NONHSAT056112.2,

URS00008C35C2_9606 lncRNA 1234 4

Ensembl: ENST00000565256 (view in UCSC) ,

LncBook: HSALNT0245550,

LNCipedia: SNHG20:8,

NONCODE: NONHSAT056113.2,

URS00008BFB3C_9606 lncRNA 786 4

Ensembl: ENST00000568363 (view in UCSC) ,

LncBook: HSALNT0245539,

LNCipedia: SNHG20:3,

NONCODE: NONHSAT056104.2,

URS0000D56D3C_9606 lncRNA 806 3

Ensembl: ENST00000564509 (view in UCSC) ,

LncBook: HSALNT0245553,

LNCipedia: SNHG20:9,

URS0000D5B94D_9606 lncRNA 603 3

Ensembl: ENST00000561633 (view in UCSC) ,

LncBook: HSALNT0245552,

LNCipedia: SNHG20:11,

SNHG20 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNHG20 Gene

17 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG20 Gene

No ASD Table

Relevant External Links for SNHG20 Gene

GeneLoc Exon Structure for
SNHG20

Expression for SNHG20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNHG20 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNHG20

genes like me logo Genes that share expression patterns with SNHG20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG20 Gene

Orthologs for SNHG20 Gene

Evolution for SNHG20 Gene

ENSEMBL:
Gene Tree for SNHG20 (if available)
TreeFam:
Gene Tree for SNHG20 (if available)

No data available for Orthologs for SNHG20 Gene

Paralogs for SNHG20 Gene

No data available for Paralogs for SNHG20 Gene

Variants for SNHG20 Gene

Additional dbSNP identifiers (rs#s) for SNHG20 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNHG20 Gene

Variant ID Type Subtype PubMed ID
dgv5784n54 CNV gain 21841781
esv3554806 CNV deletion 23714750
esv3582914 CNV loss 25503493
esv3641304 CNV gain 21293372

Additional Variant Information for SNHG20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNHG20 Gene

Disorders for SNHG20 Gene

MalaCards: The human disease database

(5) MalaCards diseases for SNHG20 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
ovarian cancer
  • ovarian cancer, somatic
hepatocellular carcinoma
  • hcc
gastric cancer
  • gastric cancer, somatic
lung cancer
  • adenocarcinoma of lung
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with SNHG20: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNHG20 Gene

Publications for SNHG20 Gene

  1. Long non-coding RNA SNHG20 predicts a poor prognosis for HCC and promotes cell invasion by regulating the epithelial-to-mesenchymal transition. (PMID: 28282787) Liu J … Ni R (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2017) 2 3
  2. Up-regulation of LncRNA SNHG20 Predicts Poor Prognosis in Hepatocellular Carcinoma. (PMID: 27053960) Zhang D … Wu D (Journal of Cancer 2016) 2 3
  3. A computational screen for mammalian pseudouridylation guide H/ACA RNAs. (PMID: 16373490) Schattner P … Lowe TM (RNA (New York, N.Y.) 2006) 2 3
  4. Prognostic value of long non-coding RNA SNHG20 in cancer: A meta-analysis. (PMID: 32118721) Zeng J … Hu Z (Medicine 2020) 3
  5. Long non-coding RNA SNHG20 promotes the tumorigenesis of oral squamous cell carcinoma via targeting miR-197/LIN28 axis. (PMID: 30394668) Wu J … Liu L (Journal of cellular and molecular medicine 2019) 3

Products for SNHG20 Gene

Sources for SNHG20 Gene