Aliases for SNHG19 Gene

Subcategory (RNA class) for SNHG19 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for SNHG19 Gene

  • Small Nucleolar RNA Host Gene 19 2 3 5
  • Small Nucleolar RNA Host Gene 19 (Non-Protein Coding) 2 3
  • SNHG19 2 170
  • NONHSAG018315 94
  • HSALNG0108990 169
  • SNORD60HG 3

External Ids for SNHG19 Gene

Previous GeneCards Identifiers for SNHG19 Gene

  • GC16M002222

Summaries for SNHG19 Gene

GeneCards Summary for SNHG19 Gene

SNHG19 (Small Nucleolar RNA Host Gene 19) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for SNHG19 Gene

  • Small nucleolar RNA SNORD60

Additional gene information for SNHG19 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNHG19 Gene

Genomics for SNHG19 Gene

GeneHancer (GH) Regulatory Elements for SNHG19 Gene

Promoters and enhancers for SNHG19 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNHG19 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNHG19 Gene

Genomic Locations for SNHG19 Gene
chr16:2,149,326-2,155,440
(GRCh38/hg38)
Size:
6,115 bases
Orientation:
Minus strand
chr16:2,204,798-2,205,359
(GRCh37/hg19)
Size:
562 bases
Orientation:
Minus strand

Genomic View for SNHG19 Gene

Genes around SNHG19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG19 Gene

Proteins for SNHG19 Gene

Post-translational modifications for SNHG19 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG19 Gene

Domains & Families for SNHG19 Gene

Gene Families for SNHG19 Gene

genes like me logo Genes that share domains with SNHG19: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNHG19 Gene

Function for SNHG19 Gene

Phenotypes From GWAS Catalog for SNHG19 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG19 Gene

Localization for SNHG19 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG19 Gene

Pathways & Interactions for SNHG19 Gene

PathCards logo

SuperPathways for SNHG19 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNHG19 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG19 Gene

Drugs & Compounds for SNHG19 Gene

No Compound Related Data Available

Transcripts for SNHG19 Gene

mRNA/cDNA for SNHG19 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) NONCODE transcripts :
(6) RNACentral transcripts :
(4) LncBook transcripts :
(6) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG19 Gene

No ASD Table

Relevant External Links for SNHG19 Gene

GeneLoc Exon Structure for
SNHG19
ECgene alternative splicing isoforms for
SNHG19

Expression for SNHG19 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG19 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG19 Gene:

SNHG19
genes like me logo Genes that share expression patterns with SNHG19: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG19 Gene

Orthologs for SNHG19 Gene

Evolution for SNHG19 Gene

ENSEMBL:
Gene Tree for SNHG19 (if available)
TreeFam:
Gene Tree for SNHG19 (if available)

No data available for Orthologs for SNHG19 Gene

Paralogs for SNHG19 Gene

No data available for Paralogs for SNHG19 Gene

Variants for SNHG19 Gene

Sequence variations from dbSNP and Humsavar for SNHG19 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000505285 -- 2,155,626(-) T/C upstream_transcript_variant
rs1000598022 -- 2,155,808(-) G/C/T upstream_transcript_variant
rs1001589685 -- 2,154,707(-) T/C downstream_transcript_variant
rs1002041677 -- 2,156,431(-) G/A upstream_transcript_variant
rs1002143455 -- 2,156,619(-) G/A upstream_transcript_variant

Additional Variant Information for SNHG19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG19

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNHG19 Gene

Disorders for SNHG19 Gene

Additional Disease Information for SNHG19

No disorders were found for SNHG19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG19 Gene

Publications for SNHG19 Gene

  1. Identification of age- and gender-associated long noncoding RNAs in the human brain with Alzheimer's disease. (PMID: 31280115) Cao M … Hu G (Neurobiology of aging 2019) 2 3 56
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 56
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  4. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 56

Products for SNHG19 Gene

Sources for SNHG19 Gene