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Aliases for SNHG19 Gene

Subcategory (RNA class) for SNHG19 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG19 Gene

  • Small Nucleolar RNA Host Gene 19 2 3 5
  • Small Nucleolar RNA Host Gene 19 (Non-Protein Coding) 2 3
  • SNORD60HG 3

External Ids for SNHG19 Gene

Previous GeneCards Identifiers for SNHG19 Gene

  • GC16M002222

Summaries for SNHG19 Gene

GeneCards Summary for SNHG19 Gene

SNHG19 (Small Nucleolar RNA Host Gene 19) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNHG19 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG19 Gene

Genomics for SNHG19 Gene

GeneHancer (GH) Regulatory Elements for SNHG19 Gene

Promoters and enhancers for SNHG19 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I002147 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 561.4 -0.4 -415 17.4 CLOCK MLX ZFP64 YBX1 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 TRAF7 SNORD60 SNHG19 ENSG00000281010 GC16M002158 GC16M002156 RAB26 ENSG00000261505 ENSG00000260051 SRRM2
GH16I001308 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 68.8 +844.6 844621 5.2 CLOCK FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 ZNF143 UBE2I LOC102723815 WDR90 CRAMP1 TELO2 ENSG00000261505 E4F1 TSC2 ENSG00000260051 IFT140
GH16I003019 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 35.6 -866.9 -866928 5.2 MLX DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF416 ZNF143 SP3 NFYC THOC6 HCFC1R1 TNFRSF12A ZNF263 ENSG00000261938 E4F1 SRRM2 TSC2 ERVK13-1 ZNF75A
GH16I001271 Enhancer 1.1 ENCODE 63.1 +883.5 883549 1.6 PKNOX1 SMAD1 SIN3A FEZF1 ZNF2 ZNF213 ZNF302 ZNF416 KLF13 SP3 CRAMP1 WDR90 IFT140 TELO2 ENSG00000260646 TSC2 ENSG00000261505 E4F1 WDR24 ENSG00000260051
GH16I002511 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 18.3 -361.1 -361078 10.7 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A DMAP1 YY1 POLR2B ATP6V0C AMDHD2 ENSG00000279520 ZNF75A TBC1D24 IFT140 ZNF213-AS1 CRAMP1 ERVK13-1 SNHG19
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNHG19 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNHG19 Gene

Genomic Locations for SNHG19 Gene
chr16:2,154,797-2,155,375
(GRCh38/hg38)
Size:
579 bases
Orientation:
Minus strand
chr16:2,204,798-2,205,359
(GRCh37/hg19)

Genomic View for SNHG19 Gene

Genes around SNHG19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG19 Gene

Proteins for SNHG19 Gene

Post-translational modifications for SNHG19 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG19 Gene

Domains & Families for SNHG19 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG19 Gene

Function for SNHG19 Gene

Phenotypes From GWAS Catalog for SNHG19 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG19 Gene

Localization for SNHG19 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG19 Gene

Pathways & Interactions for SNHG19 Gene

SuperPathways for SNHG19 Gene

No Data Available

Interacting Proteins for SNHG19 Gene

Gene Ontology (GO) - Biological Process for SNHG19 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG19 Gene

Drugs & Compounds for SNHG19 Gene

No Compound Related Data Available

Transcripts for SNHG19 Gene

mRNA/cDNA for SNHG19 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG19 Gene

No ASD Table

Relevant External Links for SNHG19 Gene

GeneLoc Exon Structure for
SNHG19
ECgene alternative splicing isoforms for
SNHG19

Expression for SNHG19 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG19 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG19 Gene:

SNHG19
genes like me logo Genes that share expression patterns with SNHG19: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG19 Gene

Orthologs for SNHG19 Gene

Evolution for SNHG19 Gene

ENSEMBL:
Gene Tree for SNHG19 (if available)
TreeFam:
Gene Tree for SNHG19 (if available)

No data available for Orthologs for SNHG19 Gene

Paralogs for SNHG19 Gene

No data available for Paralogs for SNHG19 Gene

Variants for SNHG19 Gene

Sequence variations from dbSNP and Humsavar for SNHG19 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000505285 -- 2,155,626(-) T/C upstream_transcript_variant
rs1000598022 -- 2,155,808(-) G/T upstream_transcript_variant
rs1001589685 -- 2,154,707(-) T/C downstream_transcript_variant
rs1002041677 -- 2,156,431(-) G/A upstream_transcript_variant
rs1002143455 -- 2,156,619(-) G/A upstream_transcript_variant

Additional Variant Information for SNHG19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG19

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNHG19 Gene

Disorders for SNHG19 Gene

Additional Disease Information for SNHG19

No disorders were found for SNHG19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG19 Gene

Publications for SNHG19 Gene

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for SNHG19 Gene

Sources for SNHG19 Gene

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