Aliases for SNHG17 Gene

Subcategory (RNA class) for SNHG17 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for SNHG17 Gene

  • Small Nucleolar RNA Host Gene 17 2 3 5
  • SNHG17 2 5 165
  • Small Nucleolar RNA Host Gene 17 (Non-Protein Coding) 2 3
  • NONHSAG031749.2 91
  • NONHSAG031748.2 91
  • HSALNG0129982 164
  • HSALNG0129980 164

External Ids for SNHG17 Gene

Previous GeneCards Identifiers for SNHG17 Gene

  • GC20M037076
  • GC20M037088

Summaries for SNHG17 Gene

GeneCards Summary for SNHG17 Gene

SNHG17 (Small Nucleolar RNA Host Gene 17) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SNHG17 include Colorectal Cancer.

Rfam classification for SNHG17 Gene

  • Small nucleolar RNA SNORA71

Additional gene information for SNHG17 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNHG17 Gene

Genomics for SNHG17 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNHG17 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNHG17 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNHG17 Gene

Genomic Locations for SNHG17 Gene
chr20:38,415,107-38,435,409
(GRCh38/hg38)
Size:
20,303 bases
Orientation:
Minus strand
chr20:37,049,235-37,064,018
(GRCh37/hg19)
Size:
14,784 bases
Orientation:
Minus strand

Genomic View for SNHG17 Gene

Genes around SNHG17 on UCSC Golden Path with GeneCards custom track
SNHG17 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNHG17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG17 Gene

Proteins for SNHG17 Gene

Post-translational modifications for SNHG17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG17 Gene

Domains & Families for SNHG17 Gene

Gene Families for SNHG17 Gene

genes like me logo Genes that share domains with SNHG17: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNHG17 Gene

Function for SNHG17 Gene

Phenotypes From GWAS Catalog for SNHG17 Gene

Phenotypes for SNHG17 Gene

genes like me logo Genes that share phenotypes with SNHG17: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG17 Gene

Localization for SNHG17 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNHG17 gene
Compartment Confidence
extracellular 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG17 Gene

Pathways & Interactions for SNHG17 Gene

PathCards logo

SuperPathways for SNHG17 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNHG17 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNHG17 Gene

Drugs & Compounds for SNHG17 Gene

No Compound Related Data Available

Transcripts for SNHG17 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNHG17 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00009C13F0_9606 lncRNA 648 3

Ensembl: ENST00000413755 (view in UCSC) ,

LNCipedia: SNHG17:7, SNHG17:8,

NONCODE: NONHSAT079664.2,

URS0000CCE039_9606 lncRNA 1301 2

RefSeq: NR_152754,

Ensembl: ENST00000665735 (view in UCSC) ,

URS0000CCDFFF_9606 lncRNA 1135 2

HGNC: 48600,

RefSeq: NR_015366,

URS0000CCE081_9606 lncRNA 1037 2

RefSeq: NR_152761,

Ensembl: ENST00000456953 (view in UCSC) ,

URS0000CCE00A_9606 lncRNA 1022 2

RefSeq: NR_152755,

Ensembl: ENST00000665233 (view in UCSC) ,

SNHG17 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNHG17 Gene

13 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG17 Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f · 1g ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8a · 8b ^ 9a · 9b · 9c · 9d · 9e ^ 10 ^ 11a ·
SP1: - - - - - - - - - - -
SP2: - - - - - - - - - - - - -
SP3: - - - - -
SP4: - - - - - - - - - - - - -
SP5: - - - - - - -
SP6: - - - - - - - - - - -
SP7: - - - - - - - -
SP8: - - - - - - - - -
SP9: - - - - - -
SP10: - - - - - - - -
SP11: - - - - -
SP12: - - - - - -
SP13: - - - - - - - -
SP14:
SP15:
SP16: -
SP17: - - - - - - - - -
SP18: - -

ExUns: 11b · 11c · 11d · 11e
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:
SP16:
SP17:
SP18:

Relevant External Links for SNHG17 Gene

GeneLoc Exon Structure for
SNHG17

Expression for SNHG17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNHG17 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNHG17

genes like me logo Genes that share expression patterns with SNHG17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG17 Gene

Orthologs for SNHG17 Gene

Evolution for SNHG17 Gene

ENSEMBL:
Gene Tree for SNHG17 (if available)
TreeFam:
Gene Tree for SNHG17 (if available)

No data available for Orthologs for SNHG17 Gene

Paralogs for SNHG17 Gene

No data available for Paralogs for SNHG17 Gene

Variants for SNHG17 Gene

Additional dbSNP identifiers (rs#s) for SNHG17 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNHG17 Gene

Variant ID Type Subtype PubMed ID
dgv699n67 CNV loss 20364138
dgv7570n54 CNV loss 21841781
dgv785e199 CNV deletion 23128226
esv25499 CNV loss 19812545
esv2722397 CNV deletion 23290073
esv2758794 CNV gain 17122850
esv35121 CNV gain 17911159
esv3557052 CNV deletion 23714750
esv3645784 CNV loss 21293372
esv6859 CNV loss 19470904
nsv1058457 CNV loss 25217958
nsv1063495 CNV gain 25217958
nsv509769 CNV insertion 20534489
nsv817893 CNV gain 17921354
nsv828722 CNV loss 20364138
nsv9809 CNV loss 18304495

Additional Variant Information for SNHG17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNHG17 Gene

Disorders for SNHG17 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNHG17 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with SNHG17: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNHG17 Gene

Publications for SNHG17 Gene

  1. Long non-coding RNA SNHG17 is an unfavourable prognostic factor and promotes cell proliferation by epigenetically silencing P57 in colorectal cancer. (PMID: 28933484) Ma Z … Zhao Q (Molecular bioSystems 2017) 2 3
  2. Deregulation of long noncoding RNA SNHG17 and TTC28-AS1 is associated with type 2 diabetes mellitus. (PMID: 31509021) Mohamadi M … Rahimipour A (Scandinavian journal of clinical and laboratory investigation 2019) 3
  3. LncRNA SNHG17 promotes gastric cancer progression by epigenetically silencing of p15 and p57. (PMID: 30256413) Zhang G … Jiang P (Journal of cellular physiology 2019) 3
  4. Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications. (PMID: 25307233) Zhao W … Jiao S (Scientific reports 2014) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for SNHG17 Gene

Sources for SNHG17 Gene