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Aliases for SNHG17 Gene
Subcategory (RNA class) for SNHG17 Gene
lncRNA
Number of RNA Genes sources:
4 / 17
Aliases for SNHG17 Gene
External Ids for SNHG17 Gene
- HGNC: 48600
- Entrez Gene: 388796
- Ensembl: ENSG00000196756
Previous GeneCards Identifiers for SNHG17 Gene
- GC20M037076
- GC20M037088
Summaries for SNHG17 Gene
GeneCards Summary for SNHG17 Gene
SNHG17 (Small Nucleolar RNA Host Gene 17) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SNHG17 include Colorectal Cancer.
Rfam classification for SNHG17 Gene
-
Small nucleolar RNA SNORA71
Additional gene information for SNHG17 Gene
- Monarch Initiative
- Search for SNHG17 at DataMed
- Search for SNHG17 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNHG17 Gene
Genomics for SNHG17 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SNHG17 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNHG17 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for SNHG17 Gene
Genomic Locations for SNHG17 Gene
- chr20:38,415,107-38,435,409
- (GRCh38/hg38)
- Size:
- 20,303 bases
- Orientation:
- Minus strand
- chr20:37,049,235-37,064,018
- (GRCh37/hg19)
- Size:
- 14,784 bases
- Orientation:
- Minus strand
Genomic View for SNHG17 Gene
Genes around SNHG17 on UCSC Golden Path with GeneCards custom track
SNHG17 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 20q11.23 by HGNC
- 20q11.23 by Entrez Gene
- 20q11.23 by Ensembl
SNHG17 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNHG17 Gene
Proteins for SNHG17 Gene
Post-translational modifications for SNHG17 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNHG17
- Origene Custom Protein Services for SNHG17
No data available for DME Specific Peptides for SNHG17 Gene
Domains & Families for SNHG17 Gene
Gene Families for SNHG17 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNHG17 Gene
Function for SNHG17 Gene
Phenotypes From GWAS Catalog for SNHG17 Gene
Phenotypes for SNHG17 Gene
- GenomeRNAi human phenotypes for SNHG17:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
-
OriGene CRISPR knockouts for SNHG17
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG17 Gene
Localization for SNHG17 Gene
| Compartment | Confidence |
|---|---|
| extracellular | 1 |
| nucleus | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG17 Gene
Transcripts for SNHG17 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNHG17 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00009C13F0_9606 | lncRNA | 648 | 3 |
Ensembl: ENST00000413755 (view in UCSC) , LNCipedia: SNHG17:7, SNHG17:8, NONCODE: NONHSAT079664.2, |
| URS0000CCE039_9606 | lncRNA | 1301 | 2 |
RefSeq: NR_152754, Ensembl: ENST00000665735 (view in UCSC) , |
| URS0000CCDFFF_9606 | lncRNA | 1135 | 2 |
HGNC: 48600, RefSeq: NR_015366, |
| URS0000CCE081_9606 | lncRNA | 1037 | 2 |
RefSeq: NR_152761, Ensembl: ENST00000456953 (view in UCSC) , |
| URS0000CCE00A_9606 | lncRNA | 1022 | 2 |
RefSeq: NR_152755, Ensembl: ENST00000665233 (view in UCSC) , |
SNHG17 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for SNHG17 Gene
- 13 NCBI additional mRNA sequence :
- 3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000414142 2102 nts (view in UCSC)
- ENST00000424235 764 nts (view in UCSC)
- ENST00000449469 2138 nts (view in UCSC)
CRISPR Products
-
OriGene CRISPR knockouts for SNHG17
miRNA Products
Inhibitory RNA Products
Clone Products
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | · | 1e | · | 1f | · | 1g | ^ | 2 | ^ | 3a | · | 3b | ^ | 4a | · | 4b | ^ | 5 | ^ | 6 | ^ | 7a | · | 7b | · | 7c | ^ | 8a | · | 8b | ^ | 9a | · | 9b | · | 9c | · | 9d | · | 9e | ^ | 10 | ^ | 11a | · |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | - | - | - | - | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||
| SP2: | - | - | - | - | - | - | - | - | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||
| SP3: | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||||
| SP4: | - | - | - | - | - | - | - | - | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||
| SP5: | - | - | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||
| SP6: | - | - | - | - | - | - | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||
| SP7: | - | - | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||
| SP8: | - | - | - | - | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||
| SP9: | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||||
| SP10: | - | - | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||
| SP11: | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||||
| SP12: | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||||
| SP13: | - | - | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||
| SP14: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP15: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP16: | - | |||||||||||||||||||||||||||||||||||||||||||||||||||
| SP17: | - | - | - | - | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||
| SP18: | - | - |
| ExUns: | 11b | · | 11c | · | 11d | · | 11e |
|---|---|---|---|---|---|---|---|
| SP1: | |||||||
| SP2: | |||||||
| SP3: | |||||||
| SP4: | |||||||
| SP5: | |||||||
| SP6: | |||||||
| SP7: | |||||||
| SP8: | |||||||
| SP9: | |||||||
| SP10: | |||||||
| SP11: | |||||||
| SP12: | |||||||
| SP13: | |||||||
| SP14: | |||||||
| SP15: | |||||||
| SP16: | |||||||
| SP17: | |||||||
| SP18: |
Relevant External Links for SNHG17 Gene
- GeneLoc Exon Structure for
- SNHG17
Expression for SNHG17 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNHG17
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG17 Gene
Orthologs for SNHG17 Gene
No data available for Orthologs for SNHG17 Gene
Paralogs for SNHG17 Gene
No data available for Paralogs for SNHG17 Gene
Variants for SNHG17 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv699n67 | CNV | loss | 20364138 |
| dgv7570n54 | CNV | loss | 21841781 |
| dgv785e199 | CNV | deletion | 23128226 |
| esv25499 | CNV | loss | 19812545 |
| esv2722397 | CNV | deletion | 23290073 |
| esv2758794 | CNV | gain | 17122850 |
| esv35121 | CNV | gain | 17911159 |
| esv3557052 | CNV | deletion | 23714750 |
| esv3645784 | CNV | loss | 21293372 |
| esv6859 | CNV | loss | 19470904 |
| nsv1058457 | CNV | loss | 25217958 |
| nsv1063495 | CNV | gain | 25217958 |
| nsv509769 | CNV | insertion | 20534489 |
| nsv817893 | CNV | gain | 17921354 |
| nsv828722 | CNV | loss | 20364138 |
| nsv9809 | CNV | loss | 18304495 |
Additional Variant Information for SNHG17 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNHG17
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNHG17 Gene
Disorders for SNHG17 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| colorectal cancer |
|
Search SNHG17 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for SNHG17
No data available for UniProtKB/Swiss-Prot and Genatlas for SNHG17 Gene
Publications for SNHG17 Gene
- Long non-coding RNA SNHG17 is an unfavourable prognostic factor and promotes cell proliferation by epigenetically silencing P57 in colorectal cancer. (PMID: 28933484) Ma Z … Zhao Q (Molecular bioSystems 2017) 2 3
- Deregulation of long noncoding RNA SNHG17 and TTC28-AS1 is associated with type 2 diabetes mellitus. (PMID: 31509021) Mohamadi M … Rahimipour A (Scandinavian journal of clinical and laboratory investigation 2019) 3
- LncRNA SNHG17 promotes gastric cancer progression by epigenetically silencing of p15 and p57. (PMID: 30256413) Zhang G … Jiang P (Journal of cellular physiology 2019) 3
- Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications. (PMID: 25307233) Zhao W … Jiao S (Scientific reports 2014) 3
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
ExternalLinks
Products for SNHG17 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNHG17
- Origene Custom Protein Services for SNHG17
- Browse OriGene Inhibitory RNA Products For SNHG17
- Browse OriGene qPCR primer pairs and template standards
- OriGene CRISPR knockouts for SNHG17
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNHG17
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNHG17
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNHG17
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNHG17
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNHG17
Sources for SNHG17 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB