Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNHG17 Gene

Subcategory (RNA class) for SNHG17 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG17 Gene

  • Small Nucleolar RNA Host Gene 17 2 3 5
  • Small Nucleolar RNA Host Gene 17 (Non-Protein Coding) 2

External Ids for SNHG17 Gene

Previous GeneCards Identifiers for SNHG17 Gene

  • GC20M037076
  • GC20M037088

Summaries for SNHG17 Gene

GeneCards Summary for SNHG17 Gene

SNHG17 (Small Nucleolar RNA Host Gene 17) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNHG17 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG17 Gene

Genomics for SNHG17 Gene

GeneHancer (GH) Regulatory Elements for SNHG17 Gene

Promoters and enhancers for SNHG17 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I038433 Promoter/Enhancer 1.6 Ensembl ENCODE 700 +0.6 557 2.9 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 SNHG17 GC20M038434 GC20M038437 SNORA71D ACTR5 RALGAPB ENSG00000224635 TTI1 SNORA71A SNORA71C
GH20I038139 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 55.7 +279.4 279385 33.6 MLX ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF143 MCM3 SP3 NFYC TGM2 SNHG17 RALGAPB ACTR5 RN7SKP173 SNORA71A TTI1 SNORA71C RPN2 DHX35
GH20I038031 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 44.7 +401.7 401693 3.5 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 TTI1 RPRD1B SNHG17 SNORA71A ACTR5 RALGAPB SNORA71C RN7SKP173 RPN2 RPS3P2
GH20I038446 Promoter/Enhancer 1.6 Ensembl ENCODE 46.4 -12.1 -12084 2.8 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 GC20P038450 GC20P038453 GC20P038461 GC20P038462 SNHG11 SNORA60 SNORA71E SNHG17 ACTR5 RALGAPB
GH20I038960 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 27.3 -526.8 -526773 2.5 PKNOX1 CLOCK MLX ARID4B SIN3A FEZF1 DMAP1 YY1 SLC30A9 POLR2B DHX35 ENSG00000261431 ENSG00000277581 RALGAPB FAM83D SNHG17 SNORA71C RN7SKP173 ACTR5 TTI1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNHG17 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNHG17 Gene

Genomic Locations for SNHG17 Gene
chr20:38,420,588-38,435,375
(GRCh38/hg38)
Size:
14,788 bases
Orientation:
Minus strand
chr20:37,049,235-37,064,018
(GRCh37/hg19)

Genomic View for SNHG17 Gene

Genes around SNHG17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG17 Gene

Proteins for SNHG17 Gene

Post-translational modifications for SNHG17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG17 Gene

Domains & Families for SNHG17 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG17 Gene

Function for SNHG17 Gene

Phenotypes From GWAS Catalog for SNHG17 Gene

Phenotypes for SNHG17 Gene

GenomeRNAi human phenotypes for SNHG17:
genes like me logo Genes that share phenotypes with SNHG17: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG17 Gene

Localization for SNHG17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG17 Gene

Pathways & Interactions for SNHG17 Gene

SuperPathways for SNHG17 Gene

No Data Available

Interacting Proteins for SNHG17 Gene

Gene Ontology (GO) - Biological Process for SNHG17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG17 Gene

Drugs & Compounds for SNHG17 Gene

No Compound Related Data Available

Transcripts for SNHG17 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG17 Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f · 1g ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8a · 8b ^ 9a · 9b · 9c · 9d · 9e ^ 10 ^ 11a ·
SP1: - - - - - - - - - - -
SP2: - - - - - - - - - - - - -
SP3: - - - - -
SP4: - - - - - - - - - - - - -
SP5: - - - - - - -
SP6: - - - - - - - - - - -
SP7: - - - - - - - -
SP8: - - - - - - - - -
SP9: - - - - - -
SP10: - - - - - - - -
SP11: - - - - -
SP12: - - - - - -
SP13: - - - - - - - -
SP14:
SP15:
SP16: -
SP17: - - - - - - - - -
SP18: - -

ExUns: 11b · 11c · 11d · 11e
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:
SP16:
SP17:
SP18:

Relevant External Links for SNHG17 Gene

GeneLoc Exon Structure for
SNHG17
ECgene alternative splicing isoforms for
SNHG17

Expression for SNHG17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG17 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG17 Gene:

SNHG17
genes like me logo Genes that share expression patterns with SNHG17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG17 Gene

Orthologs for SNHG17 Gene

Evolution for SNHG17 Gene

ENSEMBL:
Gene Tree for SNHG17 (if available)
TreeFam:
Gene Tree for SNHG17 (if available)

No data available for Orthologs for SNHG17 Gene

Paralogs for SNHG17 Gene

No data available for Paralogs for SNHG17 Gene

Variants for SNHG17 Gene

Sequence variations from dbSNP and Humsavar for SNHG17 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000027143 -- 38,436,741(-) A/G upstream_transcript_variant
rs1000078966 -- 38,436,465(-) C/T upstream_transcript_variant
rs1000296437 -- 38,432,492(-) CTGGCT/CT intron_variant
rs1000630605 -- 38,433,791(-) G/A intron_variant
rs1001066578 -- 38,427,223(-) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SNHG17 Gene

Variant ID Type Subtype PubMed ID
dgv699n67 CNV loss 20364138
dgv7570n54 CNV loss 21841781
dgv785e199 CNV deletion 23128226
esv25499 CNV loss 19812545
esv2722397 CNV deletion 23290073
esv2758794 CNV gain 17122850
esv35121 CNV gain 17911159
esv3557052 CNV deletion 23714750
esv3645784 CNV loss 21293372
esv6859 CNV loss 19470904
nsv1058457 CNV loss 25217958
nsv1063495 CNV gain 25217958
nsv509769 CNV insertion 20534489
nsv817893 CNV gain 17921354
nsv828722 CNV loss 20364138
nsv9809 CNV loss 18304495

Additional Variant Information for SNHG17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG17 Gene

Disorders for SNHG17 Gene

Additional Disease Information for SNHG17

No disorders were found for SNHG17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG17 Gene

Publications for SNHG17 Gene

  1. Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications. (PMID: 25307233) Zhao W … Jiao S (Scientific reports 2014) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for SNHG17 Gene

Sources for SNHG17 Gene

Content
Loading form....