SNHG16 Gene (RNA Gene)

Small Nucleolar RNA Host Gene 16

GC17P076559
GIFtS:
16

Aliases for SNHG16 Gene

Subcategory (RNA class) for SNHG16 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for SNHG16 Gene

  • Small Nucleolar RNA Host Gene 16 2 3 5
  • Small Nucleolar RNA Host Gene 16 (Non-Protein Coding) 2 3
  • Non-Coding RNA Expressed In Aggressive Neuroblastoma 2 3
  • SNHG16 2 170
  • NONHSAG022825 94
  • HSALNG0118855 169
  • Nbla10727 3
  • Nbla12061 3
  • NcRAN 3

External Ids for SNHG16 Gene

Previous GeneCards Identifiers for SNHG16 Gene

  • GC17P074570
  • GC17P074578
  • GC17P074592
  • GC17P074604

Summaries for SNHG16 Gene

GeneCards Summary for SNHG16 Gene

SNHG16 (Small Nucleolar RNA Host Gene 16) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SNHG16 include Neuroblastoma 1 and Bladder Cancer.

Rfam classification for SNHG16 Gene

Additional gene information for SNHG16 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNHG16 Gene

Genomics for SNHG16 Gene

GeneHancer (GH) Regulatory Elements for SNHG16 Gene

Promoters and enhancers for SNHG16 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNHG16 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNHG16 Gene

Genomic Locations for SNHG16 Gene
chr17:76,557,764-76,792,366
(GRCh38/hg38)
Size:
234,603 bases
Orientation:
Plus strand
chr17:74,553,846-74,561,430
(GRCh37/hg19)
Size:
7,585 bases
Orientation:
Plus strand

Genomic View for SNHG16 Gene

Genes around SNHG16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG16 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNHG16 Gene

Proteins for SNHG16 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNHG16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG16 Gene

Domains & Families for SNHG16 Gene

Gene Families for SNHG16 Gene

HGNC:
genes like me logo Genes that share domains with SNHG16: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNHG16 Gene

Function for SNHG16 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SNHG16 Gene

miRNA for SNHG16 Gene

miRTarBase miRNAs that target SNHG16

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SNHG16 Gene

Localization for SNHG16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG16 Gene

Pathways & Interactions for SNHG16 Gene

PathCards logo

SuperPathways for SNHG16 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNHG16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG16 Gene

Drugs & Compounds for SNHG16 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNHG16 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNHG16 Gene

(4) REFSEQ mRNAs :
(10) Additional mRNA sequences :
(13) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(13) NONCODE transcripts :
(24) RNACentral transcripts :
(24) LncBook transcripts :
(26) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG16 Gene

No ASD Table

Relevant External Links for SNHG16 Gene

GeneLoc Exon Structure for
SNHG16
ECgene alternative splicing isoforms for
SNHG16

Expression for SNHG16 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG16 Gene

mRNA expression in normal human tissues for SNHG16 Gene
mRNA expression by GTEx for SNHG16 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG16 Gene:

SNHG16

SOURCE GeneReport for Unigene cluster for SNHG16 Gene:

Hs.288215

Evidence on tissue expression from TISSUES for SNHG16 Gene

  • Nervous system(3.8)
  • Skin(3.7)
  • Eye(2.8)
  • Lung(2.8)
  • Liver(2)
genes like me logo Genes that share expression patterns with SNHG16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG16 Gene

Orthologs for SNHG16 Gene

Evolution for SNHG16 Gene

ENSEMBL:
Gene Tree for SNHG16 (if available)
TreeFam:
Gene Tree for SNHG16 (if available)

No data available for Orthologs for SNHG16 Gene

Paralogs for SNHG16 Gene

No data available for Paralogs for SNHG16 Gene

Variants for SNHG16 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for SNHG16 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000971841 -- 76,563,333(+) C/G non_coding_transcript_variant
rs1001121602 -- 76,561,191(+) A/T intron_variant
rs1001154963 -- 76,557,980(+) A/C intron_variant
rs1001250913 -- 76,557,140(+) G/A/C upstream_transcript_variant
rs1001375879 -- 76,562,189(+) A/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SNHG16 Gene

Variant ID Type Subtype PubMed ID
esv3641290 CNV gain 21293372
esv3641291 CNV gain 21293372
nsv828107 CNV loss 20364138

Additional Variant Information for SNHG16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG16 Gene

Disorders for SNHG16 Gene

MalaCards: The human disease database

(9) MalaCards diseases for SNHG16 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
neuroblastoma 1
  • neuroblastoma, susceptibility to, 1
bladder cancer
  • bladder cancer, somatic
cervical cancer
  • cervical cancer, somatic
esophageal cancer
  • esophageal cancer, somatic
ovarian cancer
  • ovarian cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNHG16

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with SNHG16: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNHG16 Gene

Publications for SNHG16 Gene

  1. Down-regulation of ncRAN, a long non-coding RNA, contributes to colorectal cancer cell migration and invasion and predicts poor overall survival for colorectal cancer patients. (PMID: 24519959) Qi P … Du X (Molecular carcinogenesis 2015) 2 3 56
  2. ncRAN, a newly identified long noncoding RNA, enhances human bladder tumor growth, invasion, and survival. (PMID: 21147498) Zhu Y … Li Z (Urology 2011) 2 3 56
  3. High expression of ncRAN, a novel non-coding RNA mapped to chromosome 17q25.1, is associated with poor prognosis in neuroblastoma. (PMID: 19287950) Yu M … Nakagawara A (International journal of oncology 2009) 2 3 56
  4. Long Noncoding RNA SNHG16 Promotes Osteosarcoma Cells Migration and Invasion via Sponging miRNA-340. (PMID: 30726150) Su P … Wang Z (DNA and cell biology 2019) 3 56
  5. Increased expression of long non-coding RNA SNHG16 correlates with tumor progression and poor prognosis in non-small cell lung cancer. (PMID: 30287374) Han W … Li Y (International journal of biological macromolecules 2019) 3 56

ExternalLinks

View latest publications for SNHG16 gene in Mastermind

Products for SNHG16 Gene

Sources for SNHG16 Gene