SNHG16 Gene (RNA Gene)

Small Nucleolar RNA Host Gene 16

GC17P076559
GIFtS:
17
See more...

Aliases for SNHG16 Gene

Data sources for SNHG16 Gene:

Subcategory (RNA class) for SNHG16 Gene

lncRNA

Aliases for SNHG16 Gene

External Ids for SNHG16 Gene

Previous GeneCards Identifiers for SNHG16 Gene

  • GC17P074570
  • GC17P074578
  • GC17P074592
  • GC17P074604

Summaries for SNHG16 Gene

GeneCards Summary for SNHG16 Gene

SNHG16 (Small Nucleolar RNA Host Gene 16) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SNHG16 include Neuroblastoma and Cervical Cancer.

Rfam classification for SNHG16 Gene

Additional gene information for SNHG16 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNHG16 Gene

Genomics for SNHG16 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SNHG16 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNHG16 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNHG16 Gene

Latest Assembly
chr17:76,557,359-76,792,366
(GRCh38/hg38)
Size:
235,008 bases
Orientation:
Plus strand

Previous Assembly
chr17:74,553,846-74,561,430
(GRCh37/hg19 by Entrez Gene)
Size:
7,585 bases
Orientation:
Plus strand

chr17:74,553,848-74,561,430
(GRCh37/hg19 by Ensembl)
Size:
7,583 bases
Orientation:
Plus strand

Genomic View for SNHG16 Gene

Genes around SNHG16 on UCSC Golden Path with GeneCards custom track
SNHG16 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNHG16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG16 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNHG16 Gene

Proteins for SNHG16 Gene

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  3. Assay products for research

Post-translational modifications for SNHG16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG16 Gene

Domains & Families for SNHG16 Gene

Gene Families for SNHG16 Gene

HGNC:
genes like me logo Genes that share domains with SNHG16: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNHG16 Gene

Function for SNHG16 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for SNHG16 Gene

miRNA for SNHG16 Gene

miRTarBase miRNAs that target SNHG16

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SNHG16 Gene

Localization for SNHG16 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNHG16 gene
Compartment Confidence
nucleus 2
plasma membrane 1
extracellular 1
cytoskeleton 1
mitochondrion 1
endosome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG16 Gene

Pathways & Interactions for SNHG16 Gene

PathCards logo

SuperPathways for SNHG16 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNHG16 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNHG16 Gene

Drugs & Compounds for SNHG16 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for SNHG16 Gene

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Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNHG16 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B943_9606 lncRNA 2435 5

RefSeq: NR_038111,

Ensembl: ENST00000493536 (view in UCSC) ,

LncBook: HSALNT0245442,

LNCipedia: SNHG16:2,

NONCODE: NONHSAT056038.2,

URS00009BA59F_9606 lncRNA 3607 4

Ensembl: ENST00000448136 (view in UCSC) ,

LncBook: HSALNT0245468,

LNCipedia: SNHG16:13,

NONCODE: NONHSAT056048.2,

URS000075D5E0_9606 lncRNA 2538 4

RefSeq: NR_038109,

LncBook: HSALNT0245444,

LNCipedia: SNHG16:4,

NONCODE: NONHSAT056040.2,

URS000075DE45_9606 lncRNA 2538 4

RefSeq: NR_038108,

LncBook: HSALNT0245443,

LNCipedia: SNHG16:3,

NONCODE: NONHSAT056039.2,

URS000075EC68_9606 lncRNA 2439 4

RefSeq: NR_038110,

LncBook: HSALNT0245441,

LNCipedia: SNHG16:1,

NONCODE: NONHSAT056037.2,

SNHG16 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNHG16 Gene

10 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG16 Gene

No ASD Table

Relevant External Links for SNHG16 Gene

GeneLoc Exon Structure for
SNHG16

Expression for SNHG16 Gene

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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNHG16 Gene

mRNA expression in normal human tissues for SNHG16 Gene
mRNA expression by GTEx for SNHG16 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNHG16

SOURCE GeneReport for Unigene cluster for SNHG16 Gene:

Hs.288215
genes like me logo Genes that share expression patterns with SNHG16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG16 Gene

Orthologs for SNHG16 Gene

Evolution for SNHG16 Gene

ENSEMBL:
Gene Tree for SNHG16 (if available)
TreeFam:
Gene Tree for SNHG16 (if available)

No data available for Orthologs for SNHG16 Gene

Paralogs for SNHG16 Gene

No data available for Paralogs for SNHG16 Gene

Variants for SNHG16 Gene

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  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNHG16 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SNHG16 Gene

Variant ID Type Subtype PubMed ID
esv3641290 CNV gain 21293372
esv3641291 CNV gain 21293372
nsv828107 CNV loss 20364138

Additional Variant Information for SNHG16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG16

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNHG16 Gene

Disorders for SNHG16 Gene

MalaCards: The human disease database

(9) MalaCards diseases for SNHG16 Gene - From: LNC, COP, and GCD

Disorder Aliases PubMed IDs
neuroblastoma
  • nb
cervical cancer
  • cervical cancer, somatic
bladder cancer
  • bladder cancer, somatic
esophageal cancer
  • esophageal cancer, somatic
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNHG16

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with SNHG16: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNHG16 Gene

Publications for SNHG16 Gene

  1. Down-regulation of ncRAN, a long non-coding RNA, contributes to colorectal cancer cell migration and invasion and predicts poor overall survival for colorectal cancer patients. (PMID: 24519959) Qi P … Du X (Molecular carcinogenesis 2015) 2 3 74
  2. ncRAN, a newly identified long noncoding RNA, enhances human bladder tumor growth, invasion, and survival. (PMID: 21147498) Zhu Y … Li Z (Urology 2011) 2 3 74
  3. High expression of ncRAN, a novel non-coding RNA mapped to chromosome 17q25.1, is associated with poor prognosis in neuroblastoma. (PMID: 19287950) Yu M … Nakagawara A (International journal of oncology 2009) 2 3 74
  4. SNHG16/miR-216-5p/ZEB1 signal pathway contributes to the tumorigenesis of cervical cancer cells. (PMID: 29126969) Zhu H … Ye W (Archives of biochemistry and biophysics 2018) 3 74
  5. Long non-coding RNA SNHG16 promotes cell growth and metastasis in ovarian cancer. (PMID: 29461589) Yang XS … Luo L (European review for medical and pharmacological sciences 2018) 3 74

ExternalLinks

View latest publications for SNHG16 gene in Mastermind

Products for SNHG16 Gene

Sources for SNHG16 Gene