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Aliases for SNHG16 Gene
Subcategory (RNA class) for SNHG16 Gene
lncRNA
Number of RNA Genes sources:
4 / 17
Aliases for SNHG16 Gene
External Ids for SNHG16 Gene
- HGNC: 44352
- Entrez Gene: 100507246
- Ensembl: ENSG00000163597
Previous GeneCards Identifiers for SNHG16 Gene
- GC17P074570
- GC17P074578
- GC17P074592
- GC17P074604
Summaries for SNHG16 Gene
GeneCards Summary for SNHG16 Gene
SNHG16 (Small Nucleolar RNA Host Gene 16) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SNHG16 include Neuroblastoma and Bladder Cancer.
Rfam classification for SNHG16 Gene
-
Small nucleolar RNA R38
Additional gene information for SNHG16 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNHG16 Gene
Genomics for SNHG16 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SNHG16 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNHG16 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for SNHG16 Gene
Genomic Locations for SNHG16 Gene
- chr17:76,557,359-76,792,366
- (GRCh38/hg38)
- Size:
- 235,008 bases
- Orientation:
- Plus strand
- chr17:74,553,846-74,561,430
- (GRCh37/hg19)
- Size:
- 7,585 bases
- Orientation:
- Plus strand
Genomic View for SNHG16 Gene
Genes around SNHG16 on UCSC Golden Path with GeneCards custom track
SNHG16 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 17q25.1 by HGNC
- 17q25.1 by Entrez Gene
- 17q25.1 by Ensembl
SNHG16 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNHG16 Gene
Proteins for SNHG16 Gene
Post-translational modifications for SNHG16 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNHG16
- Origene Custom Protein Services for SNHG16
No data available for DME Specific Peptides for SNHG16 Gene
Domains & Families for SNHG16 Gene
Gene Families for SNHG16 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNHG16 Gene
Function for SNHG16 Gene
Phenotypes From GWAS Catalog for SNHG16 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
-
OriGene CRISPR knockouts for SNHG16
miRNA for SNHG16 Gene
- miRTarBase miRNAs that target SNHG16
miRNA Products
Inhibitory RNA Products
- Origene sirna products in human, mouse, rat for SNHG16
- Browse OriGene Inhibitory RNA Products For SNHG16
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SNHG16 Gene
Localization for SNHG16 Gene
| Compartment | Confidence |
|---|---|
| extracellular | 1 |
| cytoskeleton | 1 |
| mitochondrion | 1 |
| nucleus | 1 |
| endosome | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG16 Gene
Transcripts for SNHG16 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNHG16 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075DE45_9606 | lncRNA | 2538 | 5 |
HGNC: 44352, RefSeq: NR_038108, LncBook: HSALNT0245443, LNCipedia: SNHG16:3, NONCODE: NONHSAT056039.2, |
| URS000075B943_9606 | lncRNA | 2435 | 5 |
RefSeq: NR_038111, Ensembl: ENST00000493536 (view in UCSC) , LncBook: HSALNT0245442, LNCipedia: SNHG16:2, NONCODE: NONHSAT056038.2, |
| URS00009BA59F_9606 | lncRNA | 3607 | 4 |
Ensembl: ENST00000448136 (view in UCSC) , LncBook: HSALNT0245468, LNCipedia: SNHG16:13, NONCODE: NONHSAT056048.2, |
| URS000075D5E0_9606 | lncRNA | 2534 | 4 |
RefSeq: NR_038109, LncBook: HSALNT0245444, LNCipedia: SNHG16:4, NONCODE: NONHSAT056040.2, |
| URS000075EC68_9606 | lncRNA | 2439 | 4 |
RefSeq: NR_038110, LncBook: HSALNT0245441, LNCipedia: SNHG16:1, NONCODE: NONHSAT056037.2, |
SNHG16 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for SNHG16 Gene
- 10 NCBI additional mRNA sequence :
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000587743 2665 nts (view in UCSC)
CRISPR Products
-
OriGene CRISPR knockouts for SNHG16
miRNA Products
Inhibitory RNA Products
- Origene sirna products in human, mouse, rat for SNHG16
- Browse OriGene Inhibitory RNA Products For SNHG16
Clone Products
Relevant External Links for SNHG16 Gene
- GeneLoc Exon Structure for
- SNHG16
Expression for SNHG16 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNHG16
SOURCE GeneReport for Unigene cluster for SNHG16 Gene:
Hs.288215Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG16 Gene
Orthologs for SNHG16 Gene
No data available for Orthologs for SNHG16 Gene
Paralogs for SNHG16 Gene
No data available for Paralogs for SNHG16 Gene
Variants for SNHG16 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv3641290 | CNV | gain | 21293372 |
| esv3641291 | CNV | gain | 21293372 |
| nsv828107 | CNV | loss | 20364138 |
Additional Variant Information for SNHG16 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNHG16
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNHG16 Gene
Disorders for SNHG16 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| neuroblastoma |
|
|
| bladder cancer |
|
|
| cervical cancer |
|
|
| esophageal cancer |
|
|
| gastric cancer |
|
Search SNHG16 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for SNHG16
No data available for UniProtKB/Swiss-Prot and Genatlas for SNHG16 Gene
Publications for SNHG16 Gene
- Down-regulation of ncRAN, a long non-coding RNA, contributes to colorectal cancer cell migration and invasion and predicts poor overall survival for colorectal cancer patients. (PMID: 24519959) Qi P … Du X (Molecular carcinogenesis 2015) 2 3
- ncRAN, a newly identified long noncoding RNA, enhances human bladder tumor growth, invasion, and survival. (PMID: 21147498) Zhu Y … Li Z (Urology 2011) 2 3
- High expression of ncRAN, a novel non-coding RNA mapped to chromosome 17q25.1, is associated with poor prognosis in neuroblastoma. (PMID: 19287950) Yu M … Nakagawara A (International journal of oncology 2009) 2 3
- SNHG16 promotes osteosarcoma progression and enhances cisplatin resistance by sponging miR-16 to upregulate ATG4B expression. (PMID: 31427084) Liu Y … Liu Q (Biochemical and biophysical research communications 2019) 3
- LncRNA SNHG16 promotes proliferation, migration and invasion of osteosarcoma cells by targeting miR-1301/BCL9 axis. (PMID: 30909141) Wang X … Wang L (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2019) 3
ExternalLinks
Products for SNHG16 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNHG16
- Origene Custom Protein Services for SNHG16
- Origene sirna products in human, mouse, rat for SNHG16
- Browse OriGene Inhibitory RNA Products For SNHG16
- Browse OriGene qPCR primer pairs and template standards
- OriGene CRISPR knockouts for SNHG16
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNHG16
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
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- Browse ELISA Kits
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- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
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- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNHG16
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNHG16
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNHG16
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNHG16
Sources for SNHG16 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB