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Aliases for SNHG15 Gene

Subcategory (RNA class) for SNHG15 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for SNHG15 Gene

  • Small Nucleolar RNA Host Gene 15 2 3 5
  • Small Nucleolar RNA Host Gene 15 (Non-Protein Coding) 2 3
  • MYO1G Upstream Transcript 2 3
  • Chromosome 7 Open Reading Frame 40 2
  • Linc-Myo1g 3
  • MYO1GUT 3
  • C7orf40 3

External Ids for SNHG15 Gene

Previous HGNC Symbols for SNHG15 Gene

  • C7orf40

Previous GeneCards Identifiers for SNHG15 Gene

  • GC07M045022

Summaries for SNHG15 Gene

Entrez Gene Summary for SNHG15 Gene

  • This gene represents a snoRNA host gene that produces a short-lived long non-coding RNA. This non-coding RNA is upregulated in tumor cells and may contribute to cell proliferation by acting as a sponge for microRNAs. [provided by RefSeq, Dec 2017]

GeneCards Summary for SNHG15 Gene

SNHG15 (Small Nucleolar RNA Host Gene 15) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNHG15 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG15 Gene

Genomics for SNHG15 Gene

GeneHancer (GH) Regulatory Elements for SNHG15 Gene

Promoters and enhancers for SNHG15 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I044983 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 579.1 +1.3 1322 5.2 HDGF PKNOX1 SMAD1 ARNT SIN3A ZNF2 IRF4 YY1 POLR2B ZNF766 SNHG15 GC07M044985 SNORA9 DDX56 CCM2 POLM SNORA5C ENSG00000260997 TMED4 SNORA5A
GH07I044845 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 20.8 +139.4 139377 4.2 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC GLIS1 H2AFV LINC01952 CICP20 DDX56 SNORA5C POLM SNORA5B ENSG00000228434 SPDYE1 TMED4
GH07I045108 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 20.1 -124.0 -123974 4 HDGF PKNOX1 CLOCK SMAD1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 TBRG4 SNHG15 NACAD CCM2 RAMP3 SNORA5B GC07P045063
GH07I044605 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 10.7 +379.4 379430 4.3 HDGF PKNOX1 CLOCK SMAD1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 OGDH SPDYE1 ENSG00000228434 ENSG00000228596 SNHG15 TBRG4 DDX56 NUDCD3 GC07M044657
GH07I044880 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.6 +101.9 101866 9.8 HDGF PKNOX1 CLOCK SMAD1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 ENSG00000272768 PURB PIR54023 H2AFV LINC01952 SNHG15 MYO1G ENSG00000228596 PPIA ZMIZ2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNHG15 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNHG15 Gene

Genomic Locations for SNHG15 Gene
chr7:44,983,023-44,986,961
(GRCh38/hg38)
Size:
3,939 bases
Orientation:
Minus strand
chr7:45,022,622-45,026,560
(GRCh37/hg19)

Genomic View for SNHG15 Gene

Genes around SNHG15 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG15 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG15 Gene

Proteins for SNHG15 Gene

Post-translational modifications for SNHG15 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG15 Gene

Domains & Families for SNHG15 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG15 Gene

Function for SNHG15 Gene

Phenotypes From GWAS Catalog for SNHG15 Gene

Animal Model Products

miRNA for SNHG15 Gene

miRTarBase miRNAs that target SNHG15

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SNHG15 Gene

Localization for SNHG15 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG15 Gene

Pathways & Interactions for SNHG15 Gene

SuperPathways for SNHG15 Gene

No Data Available

Interacting Proteins for SNHG15 Gene

Gene Ontology (GO) - Biological Process for SNHG15 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG15 Gene

Drugs & Compounds for SNHG15 Gene

No Compound Related Data Available

Transcripts for SNHG15 Gene

mRNA/cDNA for SNHG15 Gene

(3) Additional mRNA sequences :
(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG15 Gene

Small nucleolar RNA host gene 15 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG15 Gene

No ASD Table

Relevant External Links for SNHG15 Gene

GeneLoc Exon Structure for
SNHG15
ECgene alternative splicing isoforms for
SNHG15

Expression for SNHG15 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG15 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG15 Gene:

SNHG15

SOURCE GeneReport for Unigene cluster for SNHG15 Gene:

Hs.25892
genes like me logo Genes that share expression patterns with SNHG15: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG15 Gene

Orthologs for SNHG15 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNHG15 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA9 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA9 34
  • 92 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm22457 34
  • 92 (a)
ManyToMany
Gm23626 34
  • 90 (a)
ManyToMany
Gm25800 34
  • 87 (a)
ManyToMany
Gm24438 34
  • 75 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA9 34
  • 82 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA9 34 34
  • 71 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA9 34 34 34
  • 59 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA9 34
  • 68 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA9 34 34
  • 66 (a)
ManyToMany
Species where no ortholog for SNHG15 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNHG15 Gene

ENSEMBL:
Gene Tree for SNHG15 (if available)
TreeFam:
Gene Tree for SNHG15 (if available)

Paralogs for SNHG15 Gene

No data available for Paralogs for SNHG15 Gene

Variants for SNHG15 Gene

Sequence variations from dbSNP and Humsavar for SNHG15 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000729713 -- 44,986,308(-) G/T intron_variant
rs1001967210 -- 44,986,040(-) G/C non_coding_transcript_variant
rs1002636400 -- 44,988,189(-) G/A upstream_transcript_variant
rs1003147464 -- 44,986,220(-) T/G intron_variant
rs1003177516 -- 44,983,251(-) T/C non_coding_transcript_variant

Additional Variant Information for SNHG15 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNHG15 Gene

Disorders for SNHG15 Gene

Additional Disease Information for SNHG15

No disorders were found for SNHG15 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG15 Gene

Publications for SNHG15 Gene

  1. Identification of short-lived long non-coding RNAs as surrogate indicators for chemical stress response. (PMID: 24036268) Tani H … Torimura M (Biochemical and biophysical research communications 2013) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 2 3 58
  3. Long noncoding RNA SNHG15 promotes human breast cancer proliferation, migration and invasion by sponging miR-211-3p. (PMID: 29217194) Kong Q … Qiu M (Biochemical and biophysical research communications 2018) 3 58
  4. Short-lived long non-coding RNAs as surrogate indicators for chemical exposure and LINC00152 and MALAT1 modulate their neighboring genes. (PMID: 28719640) Tani H … Umemura T (PloS one 2017) 3 58
  5. SNHG15 affects the growth of glioma microvascular endothelial cells by negatively regulating miR-153. (PMID: 29048682) Ma Y … Liu Y (Oncology reports 2017) 3 58

Products for SNHG15 Gene

Sources for SNHG15 Gene

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