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Aliases for SNHG12 Gene

Subcategory (RNA class) for SNHG12 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SNHG12 Gene

  • Small Nucleolar RNA Host Gene 12 2 3 5
  • Small Nucleolar RNA Host Gene 12 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 100 2 3
  • C1orf79 3 4
  • Transformation-Related Gene 11 Protein 4
  • Chromosome 1 Open Reading Frame 79 2
  • ASLNC04080 3
  • NCRNA00100 3
  • LINC00100 3
  • PNAS-123 3
  • TRG-11 4

External Ids for SNHG12 Gene

Previous HGNC Symbols for SNHG12 Gene

  • C1orf79

Previous GeneCards Identifiers for SNHG12 Gene

  • GC01U902257
  • GC01M028784
  • GC01M028905

Summaries for SNHG12 Gene

Entrez Gene Summary for SNHG12 Gene

  • This gene produces a long RNA that is overexpressed in tumor cells. This RNA may promote tumorigenesis by acting as a sponge for microRNAs. [provided by RefSeq, Dec 2017]

GeneCards Summary for SNHG12 Gene

SNHG12 (Small Nucleolar RNA Host Gene 12) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNHG12 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG12 Gene

Genomics for SNHG12 Gene

GeneHancer (GH) Regulatory Elements for SNHG12 Gene

Promoters and enhancers for SNHG12 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I028578 Promoter/Enhancer 1.6 Ensembl ENCODE 636.8 +1.8 1783 4.5 ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC SNHG12 GC01M028584 GC01M028612 GC01M028618 GC01M028623 GC01M028624 GC01M028625 GC01M028628 PIR59489 SNORA16A
GH01I028881 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 102.4 -302.3 -302259 6.8 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 EPB41 LOC105376898 SRSF4 TRNAU1AP GMEB1 SNHG12 YTHDF2 PHACTR4 EYA3 TMEM200B
GH01I028647 Promoter/Enhancer 1.7 Ensembl ENCODE 87.2 -65.5 -65462 2.7 CLOCK ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ENSG00000270103 GC01P028651 GC01P028669 GC01P028670 GC01P028671 GC01P028672 RNU11 SRSF4 GMEB1 TRNAU1AP
GH01I029236 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 61.6 -655.7 -655731 5.1 HDGF FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 ZNF207 ZNF143 DEK PTPRU SRSF4 GMEB1 TRNAU1AP YTHDF2 SNHG12 PHACTR4 TMEM200B RCC1 ENSG00000237934
GH01I028258 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 45 +323.0 323015 3.7 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A YY1 POLR2B ZNF766 ZNF213 SESN2 SRSF4 SNHG12 TRNAU1AP GMEB1 YTHDF2 PHACTR4 DNAJC8 ACTG1P20 ENSG00000270605
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNHG12 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNHG12 gene promoter:

Genomic Locations for SNHG12 Gene

Genomic Locations for SNHG12 Gene
4,446 bases
Minus strand

Genomic View for SNHG12 Gene

Genes around SNHG12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG12 Gene

Proteins for SNHG12 Gene

  • Protein details for SNHG12 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein SNHG12
    Protein Accession:

    Protein attributes for SNHG12 Gene

    62 amino acids
    Molecular mass:
    6988 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SNHG12 Gene

Post-translational modifications for SNHG12 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG12 Gene

Domains & Families for SNHG12 Gene

Gene Families for SNHG12 Gene

Protein Domains for SNHG12 Gene


Suggested Antigen Peptide Sequences for SNHG12 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG12: view

No data available for UniProtKB/Swiss-Prot for SNHG12 Gene

Function for SNHG12 Gene

Phenotypes From GWAS Catalog for SNHG12 Gene

Phenotypes for SNHG12 Gene

GenomeRNAi human phenotypes for SNHG12:
genes like me logo Genes that share phenotypes with SNHG12: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG12 Gene

Localization for SNHG12 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG12 Gene

Pathways & Interactions for SNHG12 Gene

SuperPathways for SNHG12 Gene

No Data Available

Interacting Proteins for SNHG12 Gene

Gene Ontology (GO) - Biological Process for SNHG12 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNHG12 Gene

Drugs & Compounds for SNHG12 Gene

No Compound Related Data Available

Transcripts for SNHG12 Gene

Unigene Clusters for SNHG12 Gene

Small nucleolar RNA host gene 12 (non-protein coding):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG12 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3a · 3b · 3c · 3d ^ 4a · 4b · 4c · 4d · 4e ^ 5 ^ 6a · 6b
SP1: - - - - - - - -
SP2: - - - - - - - -
SP3: - - - - - -
SP4: - - - - -
SP5: - -
SP6: - - - -
SP7: -
SP8: - - - - -
SP9: - - -

Relevant External Links for SNHG12 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNHG12 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG12 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG12 Gene:


SOURCE GeneReport for Unigene cluster for SNHG12 Gene:

genes like me logo Genes that share expression patterns with SNHG12: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG12 Gene

Orthologs for SNHG12 Gene

Evolution for SNHG12 Gene

Gene Tree for SNHG12 (if available)
Gene Tree for SNHG12 (if available)

No data available for Orthologs for SNHG12 Gene

Paralogs for SNHG12 Gene

No data available for Paralogs for SNHG12 Gene

Variants for SNHG12 Gene

Sequence variations from dbSNP and Humsavar for SNHG12 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000018185 -- 28,580,922(-) C/A/G/T intron_variant
rs1000600385 -- 28,579,545(-) G/A non_coding_transcript_variant
rs1000729977 -- 28,578,120(-) G/T downstream_transcript_variant
rs1001005507 -- 28,582,981(-) C/T upstream_transcript_variant
rs1001280446 -- 28,583,439(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNHG12 Gene

Variant ID Type Subtype PubMed ID
esv2671121 CNV deletion 23128226
nsv545916 CNV gain 21841781

Additional Variant Information for SNHG12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG12 Gene

Disorders for SNHG12 Gene

Additional Disease Information for SNHG12

No disorders were found for SNHG12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG12 Gene

Publications for SNHG12 Gene

  1. CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells. (PMID: 27980086) Liu SJ … Lim DA (Science (New York, N.Y.) 2017) 2 3 58
  2. Microarray expression profile of lncRNAs and the upregulated ASLNC04080 lncRNA in human endometrial carcinoma. (PMID: 25695231) Zhai W … Chen W (International journal of oncology 2015) 2 3 58
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 4 58
  4. LncRNA SNHG12 promotes tumorigenesis and metastasis in osteosarcoma by upregulating Notch2 by sponging miR-195-5p. (PMID: 29229388) Zhou S … Dai G (Biochemical and biophysical research communications 2018) 3 58
  5. LncRNA SNHG12 regulates gastric cancer progression by acting as a molecular sponge of miR‑320. (PMID: 29207106) Zhang H … Lu W (Molecular medicine reports 2018) 3 58

Products for SNHG12 Gene

Sources for SNHG12 Gene

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