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This gene is a member of the non-protein-coding multiple snoRNA host gene family. Two snoRNAs are derived from the introns of this host gene. Although many alternative splice variants have been observed, the gene is thought to have no protein-coding potential. [provided by RefSeq, Jul 2008] See more...
Aliases for SNHG11 Gene
Subcategory (RNA class) for SNHG11 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for SNHG11 Gene
External Ids for SNHG11 Gene
- HGNC: 25046
- Entrez Gene: 128439
- Ensembl: ENSG00000174365
Previous HGNC Symbols for SNHG11 Gene
- C20orf198
Previous GeneCards Identifiers for SNHG11 Gene
- GC20P036520
- GC20P036523
- GC20P036526
- GC20P036529
- GC20P037075
- GC20P033810
Summaries for SNHG11 Gene
-
This gene is a member of the non-protein-coding multiple snoRNA host gene family. Two snoRNAs are derived from the introns of this host gene. Although many alternative splice variants have been observed, the gene is thought to have no protein-coding potential. [provided by RefSeq, Jul 2008]
GeneCards Summary for SNHG11 Gene
SNHG11 (Small Nucleolar RNA Host Gene 11) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SNHG11 include Body Mass Index Quantitative Trait Locus 11.
Rfam classification for SNHG11 Gene
-
Small nucleolar RNA SNORA71
Additional gene information for SNHG11 Gene
No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNHG11 Gene
Genomics for SNHG11 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SNHG11 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNHG11 on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the SNHG11 gene promoter:
-
- Elk-1
- GR
- GR-alpha
- GR-beta
- HSF1 (long)
- HSF1short
- POU3F2
- RORalpha2
Genomic Locations for SNHG11 Gene
Genomic Locations for SNHG11 Gene
- chr20:38,446,343-38,450,940
- (GRCh38/hg38)
- Size:
- 4,598 bases
- Orientation:
- Plus strand
- chr20:37,075,221-37,079,564
- (GRCh37/hg19)
- Size:
- 4,344 bases
- Orientation:
- Plus strand
Genomic View for SNHG11 Gene
Genes around SNHG11 on UCSC Golden Path with GeneCards custom track
SNHG11 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 20q11.23 by HGNC
- 20q11.23 by Entrez Gene
- 20q11.23 by Ensembl
SNHG11 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNHG11 Gene
Proteins for SNHG11 Gene
Post-translational modifications for SNHG11 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNHG11
- Origene Custom Protein Services for SNHG11
No data available for DME Specific Peptides for SNHG11 Gene
Domains & Families for SNHG11 Gene
Gene Families for SNHG11 Gene
Suggested Antigen Peptide Sequences for SNHG11 Gene
- GenScript: Design optimal peptide antigens:
-
- Hypothetical gene LOC128439, isoform CRA_c (E1P5F8_HUMAN)
- Hypothetical gene LOC128439, isoform CRA_b (E1P5W1_HUMAN)
No data available for Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNHG11 Gene
Function for SNHG11 Gene
Phenotypes for SNHG11 Gene
- GenomeRNAi human phenotypes for SNHG11:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SNHG11 - Select products 50% OFF >
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-
OriGene CRISPR knockouts for SNHG11
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for SNHG11
miRNA for SNHG11 Gene
- miRTarBase miRNAs that target SNHG11
-
- mmu-miR-758-3p (MIRT007591)
- mmu-miR-425-5p (MIRT008666)
- mmu-miR-7b-5p (MIRT009312)
- mmu-miR-340-5p (MIRT010438)
- mmu-miR-324-3p (MIRT010899)
- mmu-miR-26a-5p (MIRT011249)
- mmu-miR-190a-5p (MIRT013641)
- mmu-miR-149-5p (MIRT014552)
- mmu-miR-546 (MIRT425281)
- mmu-miR-3082-5p (MIRT577648)
- mmu-miR-466l-3p (MIRT585786)
- mmu-miR-1264-3p (MIRT585787)
- mmu-miR-5101 (MIRT595949)
- mmu-miR-3074-2-3p (MIRT595950)
- mmu-miR-5102 (MIRT597204)
- mmu-miR-493-3p (MIRT597205)
- mmu-miR-3092-3p (MIRT597206)
- mmu-miR-3089-5p (MIRT597207)
- mmu-miR-3106-5p (MIRT597208)
- mmu-miR-24-3p (MIRT597209)
- mmu-miR-122-5p (MIRT597210)
- mmu-miR-466i-3p (MIRT597211)
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for SNHG11
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Clone Products
- Applied Biological Materials (abm): Clones for SNHG11 - Select products 50% OFF >
- * SNHG11 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for SNHG11
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SNHG11 Gene
Localization for SNHG11 Gene
| Compartment | Confidence |
|---|---|
| cytoskeleton | 1 |
| nucleus | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG11 Gene
Transcripts for SNHG11 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNHG11 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00008B3131_9606 | lncRNA | 1046 | 3 |
Ensembl: ENST00000421599 (view in UCSC) , LNCipedia: SNHG11:5, NONCODE: NONHSAT079676.2, |
| URS00008B7A06_9606 | lncRNA | 954 | 3 |
Ensembl: ENST00000449351 (view in UCSC) , LNCipedia: SNHG11:6, NONCODE: NONHSAT079677.2, |
| URS00008B2A81_9606 | lncRNA | 880 | 3 |
Ensembl: ENST00000457218 (view in UCSC) , LncBook: HSALNT0267007, LNCipedia: SNHG11:18, |
| URS00008BD40D_9606 | lncRNA | 720 | 3 |
Ensembl: ENST00000420006 (view in UCSC) , LNCipedia: SNHG11:7, NONCODE: NONHSAT079678.2, |
| URS000075E4A3_9606 | lncRNA | 1087 | 2 |
HGNC: 25046, RefSeq: NR_003239, |
SNHG11 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for SNHG11 Gene
- 1 REFSEQ mRNAs :
- 2 NCBI additional mRNA sequence :
- 6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000400436 2652 nts (view in UCSC)
- ENST00000418383 1490 nts (view in UCSC)
- ENST00000437028 1169 nts (view in UCSC)
- ENST00000453698 1323 nts (view in UCSC)
- ENST00000483342 1575 nts (view in UCSC)
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SNHG11 - Select products 50% OFF >
- * SNHG11 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
-
OriGene CRISPR knockouts for SNHG11
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for SNHG11
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for SNHG11
- Browse OriGene Inhibitory RNA Products For SNHG11
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SNHG11
Clone Products
- Applied Biological Materials (abm): Clones for SNHG11 - Select products 50% OFF >
- * SNHG11 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for SNHG11
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2a | · | 2b | · | 2c | · | 2d | ^ | 3a | · | 3b | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | · | 6c | · | 6d | ^ | 7a | · | 7b | · | 7c | · | 7d | · | 7e |
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| SP1: | - | - | - | - | - | ||||||||||||||||||||||||||||||||||
| SP2: | - | - | - | - | - | ||||||||||||||||||||||||||||||||||
| SP3: | - | - | - | - | |||||||||||||||||||||||||||||||||||
| SP4: | - | - | - | ||||||||||||||||||||||||||||||||||||
| SP5: | - | ||||||||||||||||||||||||||||||||||||||
| SP6: | - | - | - | - | - | ||||||||||||||||||||||||||||||||||
| SP7: | - | - | |||||||||||||||||||||||||||||||||||||
| SP8: | - | - | - | ||||||||||||||||||||||||||||||||||||
| SP9: | - | - | - | - | |||||||||||||||||||||||||||||||||||
| SP10: | |||||||||||||||||||||||||||||||||||||||
| SP11: | - | - | - | ||||||||||||||||||||||||||||||||||||
| SP12: | - | - | |||||||||||||||||||||||||||||||||||||
| SP13: | - | - | - |
Relevant External Links for SNHG11 Gene
- GeneLoc Exon Structure for
- SNHG11
Expression for SNHG11 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNHG11
SOURCE GeneReport for Unigene cluster for SNHG11 Gene:
Hs.16936Primer Products
-
OriGene qPCR primer pairs for SNHG11
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG11 Gene
Orthologs for SNHG11 Gene
No data available for Orthologs for SNHG11 Gene
Paralogs for SNHG11 Gene
No data available for Paralogs for SNHG11 Gene
Variants for SNHG11 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2758794 | CNV | gain | 17122850 |
| esv35121 | CNV | gain | 17911159 |
| nsv1058457 | CNV | loss | 25217958 |
| nsv1063495 | CNV | gain | 25217958 |
| nsv509769 | CNV | insertion | 20534489 |
| nsv817893 | CNV | gain | 17921354 |
Additional Variant Information for SNHG11 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNHG11
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNHG11 Gene
Disorders for SNHG11 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| body mass index quantitative trait locus 11 |
|
Search SNHG11 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for SNHG11
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No data available for UniProtKB/Swiss-Prot and Genatlas for SNHG11 Gene
Publications for SNHG11 Gene
- Expression pattern of small nucleolar RNA host genes and long non-coding RNA in X-rays-treated lymphoblastoid cells. (PMID: 23698766) Chaudhry MA (International journal of molecular sciences 2013) 2 3
- Use of genome-wide expression data to mine the "Gray Zone" of GWA studies leads to novel candidate obesity genes. (PMID: 20532202) Naukkarinen J … ENGAGE Consortium (PLoS genetics 2010) 3 41
- A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
ExternalLinks
Products for SNHG11 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNHG11
- Origene Custom Protein Services for SNHG11
- Origene shrna, sirna, and RNAi products in human, mouse, rat for SNHG11
- Browse OriGene Inhibitory RNA Products For SNHG11
- OriGene qPCR primer pairs for SNHG11
- OriGene CRISPR knockouts for SNHG11
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNHG11
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
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- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- VectorBuilder Custom and pre-made DNA vectors for SNHG11 (ie. gene expression, shRNA knockdown, CRISPR)
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- VectorBuilder Stable cell line generation for SNHG11
- antibodies-online: Search results for available SNHG11 related products ranked by validation data
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- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SNHG11
Sources for SNHG11 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB