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Aliases for SNHG11 Gene

Subcategory (RNA class) for SNHG11 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for SNHG11 Gene

  • Small Nucleolar RNA Host Gene 11 2 3 5
  • Small Nucleolar RNA Host Gene 11 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 101 2 3
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 11 3
  • Chromosome 20 Open Reading Frame 198 2
  • NCRNA00101 3
  • LINC00101 3
  • C20orf198 3

External Ids for SNHG11 Gene

Previous HGNC Symbols for SNHG11 Gene

  • C20orf198

Previous GeneCards Identifiers for SNHG11 Gene

  • GC20P036520
  • GC20P036523
  • GC20P036526
  • GC20P036529
  • GC20P037075
  • GC20P033810

Summaries for SNHG11 Gene

Entrez Gene Summary for SNHG11 Gene

  • This gene is a member of the non-protein-coding multiple snoRNA host gene family. Two snoRNAs are derived from the introns of this host gene. Although many alternative splice variants have been observed, the gene is thought to have no protein-coding potential. [provided by RefSeq, Jul 2008]

GeneCards Summary for SNHG11 Gene

SNHG11 (Small Nucleolar RNA Host Gene 11) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with SNHG11 include Body Mass Index Quantitative Trait Locus 11.

Additional gene information for SNHG11 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG11 Gene

Genomics for SNHG11 Gene

GeneHancer (GH) Regulatory Elements for SNHG11 Gene

Promoters and enhancers for SNHG11 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J038446 Promoter/Enhancer 1.6 Ensembl ENCODE 600.7 +0.9 862 2.9 ZNF652 SP1 CC2D1A ZFX CTCF ELF3 MNT CBFA2T2 NKRF POLR2A GC20P038450 GC20P038453 GC20P038465 GC20P038466 SNHG11 SNORA60 SNORA71E SNHG17 ACTR5 ENSG00000224635
GH20J038445 Promoter 1 Ensembl 600.7 -0.9 -877 0.2 PPARG HMG20B CEBPA RCOR2 RFX3 ZBTB26 TEAD1 FOXP1 GATAD1 HOMEZ SNHG11 ENSG00000201811
GH20J038433 Promoter/Enhancer 1.6 Ensembl ENCODE 22.8 -11.8 -11760 2.9 HDGF ZNF652 SP1 CC2D1A ZFX CTCF ELF3 MNT SIX5 NKRF SNHG17 GC20M038435 SNORA71D RALGAPB ACTR5 ENSG00000224635 TTI1 SNORA71C SNORA71A SNHG11
GH20J038925 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 12.4 +481.3 481258 5.3 ZNF652 ZFX SP1 ELF3 CC2D1A CTCF MNT NKRF POLR2A MLLT1 FAM83D DHX35 ACTR5 RALGAPB SNHG11 SNORA60 GC20M038952
GH20J038471 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 12.1 +26.5 26520 3.4 SP1 ZFX CTCF ELF3 MNT NKRF POLR2A CEBPG RERE GTF2F1 RALGAPB SNHG17 ENSG00000224635 SNORA60 SNHG11 ENSG00000201811 SNORA71D SNORA71C SNORA71A SNORA71B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNHG11 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNHG11 gene promoter:
  • Elk-1
  • GR
  • GR-alpha
  • GR-beta
  • HSF1 (long)
  • HSF1short
  • POU3F2
  • RORalpha2

Genomic Locations for SNHG11 Gene

Genomic Locations for SNHG11 Gene
chr20:38,446,578-38,450,921
(GRCh38/hg38)
Size:
4,344 bases
Orientation:
Plus strand
chr20:37,075,221-37,079,564
(GRCh37/hg19)
Size:
4,344 bases
Orientation:
Plus strand

Genomic View for SNHG11 Gene

Genes around SNHG11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG11 Gene

Proteins for SNHG11 Gene

Post-translational modifications for SNHG11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG11 Gene

Domains & Families for SNHG11 Gene

Gene Families for SNHG11 Gene

Suggested Antigen Peptide Sequences for SNHG11 Gene

GenScript: Design optimal peptide antigens:
  • Hypothetical gene LOC128439, isoform CRA_c (E1P5F8_HUMAN)
  • Hypothetical gene LOC128439, isoform CRA_b (E1P5W1_HUMAN)

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG11: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNHG11 Gene

Function for SNHG11 Gene

Phenotypes for SNHG11 Gene

genes like me logo Genes that share phenotypes with SNHG11: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SNHG11

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG11 Gene

Localization for SNHG11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG11 Gene

Pathways & Interactions for SNHG11 Gene

PathCards logo

SuperPathways for SNHG11 Gene

No Data Available

Interacting Proteins for SNHG11 Gene

Gene Ontology (GO) - Biological Process for SNHG11 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG11 Gene

Drugs & Compounds for SNHG11 Gene

No Compound Related Data Available

Transcripts for SNHG11 Gene

mRNA/cDNA for SNHG11 Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(143) Selected AceView cDNA sequences:
(15) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Unigene Clusters for SNHG11 Gene

Small nucleolar RNA host gene 11 (non-protein coding):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SNHG11

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG11 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c · 2d ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b · 6c · 6d ^ 7a · 7b · 7c · 7d · 7e
SP1: - - - - -
SP2: - - - - -
SP3: - - - -
SP4: - - -
SP5: -
SP6: - - - - -
SP7: - -
SP8: - - -
SP9: - - - -
SP10:
SP11: - - -
SP12: - -
SP13: - - -

Relevant External Links for SNHG11 Gene

GeneLoc Exon Structure for
SNHG11
ECgene alternative splicing isoforms for
SNHG11

Expression for SNHG11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG11 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG11 Gene:

SNHG11

SOURCE GeneReport for Unigene cluster for SNHG11 Gene:

Hs.16936
genes like me logo Genes that share expression patterns with SNHG11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG11 Gene

Orthologs for SNHG11 Gene

Evolution for SNHG11 Gene

ENSEMBL:
Gene Tree for SNHG11 (if available)
TreeFam:
Gene Tree for SNHG11 (if available)

No data available for Orthologs for SNHG11 Gene

Paralogs for SNHG11 Gene

No data available for Paralogs for SNHG11 Gene

Variants for SNHG11 Gene

Sequence variations from dbSNP and Humsavar for SNHG11 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000630883 -- 38,447,019(+) C/T intron_variant
rs1001525994 -- 38,448,074(+) T/C intron_variant
rs1001913821 -- 38,446,410(+) G/A upstream_transcript_variant
rs1002154 -- 38,448,977(+) C/T intron_variant
rs1002261348 -- 38,446,717(+) C/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNHG11 Gene

Variant ID Type Subtype PubMed ID
esv2758794 CNV gain 17122850
esv35121 CNV gain 17911159
nsv1058457 CNV loss 25217958
nsv1063495 CNV gain 25217958
nsv509769 CNV insertion 20534489
nsv817893 CNV gain 17921354

Additional Variant Information for SNHG11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG11 Gene

Disorders for SNHG11 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNHG11 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
body mass index quantitative trait locus 11
  • bmiq11
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNHG11

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with SNHG11: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNHG11 Gene

Publications for SNHG11 Gene

  1. Expression pattern of small nucleolar RNA host genes and long non-coding RNA in X-rays-treated lymphoblastoid cells. (PMID: 23698766) Chaudhry MA (International journal of molecular sciences 2013) 2 3 58
  2. Use of genome-wide expression data to mine the "Gray Zone" of GWA studies leads to novel candidate obesity genes. (PMID: 20532202) Naukkarinen J … ENGAGE Consortium (PLoS genetics 2010) 3 45 58
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for SNHG11 Gene

Sources for SNHG11 Gene

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