Aliases for SNED1-AS1 Gene

Data sources for SNED1-AS1 Gene:

Subcategory (RNA class) for SNED1-AS1 Gene

lncRNA

Aliases for SNED1-AS1 Gene

External Ids for SNED1-AS1 Gene

Summaries for SNED1-AS1 Gene

GeneCards Summary for SNED1-AS1 Gene

SNED1-AS1 (SNED1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SNED1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SNED1-AS1 Gene

Genomics for SNED1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNED1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J241063 Promoter 1.1 EPDnew Ensembl 258.5 -0.2 -155 1 ZIC2 MBD2 SP1 CTCF POLR2A GLIS1 TCF12 KLF1 HNRNPL KLF8 SNED1-AS1 ANKMY1 piR-49107 MTERF4 SNED1
GH02J241062 Enhancer 0.3 ENCODE 250.7 +1.7 1707 0.2 FOS HSALNG0023639 SNED1-AS1 MTERF4 SNED1
GH02J241034 Promoter/Enhancer 1.1 Ensembl ENCODE 4.8 +27.8 27761 3 SIX4 SIN3A EBF1 SMARCA5 TBP BHLHE40 HNF4A ELF1 RB1 TAF1 PASK SNED1-AS1 HSALNG0023638 LOC107985787 SNED1 MTERF4
GH02J241040 Enhancer 0.9 Ensembl ENCODE 4.8 +22.1 22114 2.7 SP1 BCL11A TRIM22 SMARCA5 BHLHE40 BATF ELF1 IKZF1 NR2F1 HDGF PASK ENSG00000229996 SNED1 PPP1R7 ANO7 SNED1-AS1 HSALNG0023638 LOC107985787 MTERF4
GH02J241061 Enhancer 0.3 Ensembl 0.7 +2.8 2780 0.6 CEBPA CEBPB HSALNG0023639 SEPTIN2 SNED1-AS1 MTERF4 SNED1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNED1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNED1-AS1 Gene

Latest Assembly
chr2:241,013,556-241,064,146
(GRCh38/hg38)
Size:
50,591 bases
Orientation:
Minus strand

Previous Assembly
chr2:241,955,016-242,003,533
(GRCh37/hg19 by Ensembl)
Size:
48,518 bases
Orientation:
Minus strand

Genomic View for SNED1-AS1 Gene

Genes around SNED1-AS1 on UCSC Golden Path with GeneCards custom track
SNED1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNED1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNED1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNED1-AS1 Gene

Proteins for SNED1-AS1 Gene

Post-translational modifications for SNED1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNED1-AS1 Gene

Domains & Families for SNED1-AS1 Gene

Gene Families for SNED1-AS1 Gene

genes like me logo Genes that share domains with SNED1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNED1-AS1 Gene

Function for SNED1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNED1-AS1 Gene

Localization for SNED1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNED1-AS1 Gene

Pathways & Interactions for SNED1-AS1 Gene

PathCards logo

SuperPathways for SNED1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNED1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNED1-AS1 Gene

Drugs & Compounds for SNED1-AS1 Gene

No Compound Related Data Available

Transcripts for SNED1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNED1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000243EC0_9606 lncRNA 559 4

Ensembl: ENST00000458377 (view in UCSC) ,

LncBook: HSALNT0049857,

LNCipedia: lnc-MTERF4-1:1,

NONCODE: NONHSAT077872.2,

URS00009B6FA7_9606 lncRNA 559 2

LncBook: HSALNT0049858,

NONCODE: NONHSAT186540.1,

URS0001BF12B9_9606 lncRNA 910 1

LncBook: HSALNT0049862,

URS0001BF46F0_9606 lncRNA 861 1

LncBook: HSALNT0049861,

URS0001BD985F_9606 lncRNA 559 1

LncBook: HSALNT0049858,

SNED1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNED1-AS1 Gene

No ASD Table

Relevant External Links for SNED1-AS1 Gene

GeneLoc Exon Structure for
SNED1-AS1

No data available for mRNA/cDNA for SNED1-AS1 Gene

Expression for SNED1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNED1-AS1 Gene

Orthologs for SNED1-AS1 Gene

Evolution for SNED1-AS1 Gene

ENSEMBL:
Gene Tree for SNED1-AS1 (if available)
TreeFam:
Gene Tree for SNED1-AS1 (if available)

No data available for Orthologs for SNED1-AS1 Gene

Paralogs for SNED1-AS1 Gene

No data available for Paralogs for SNED1-AS1 Gene

Variants for SNED1-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNED1-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for SNED1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNED1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNED1-AS1 Gene

Disorders for SNED1-AS1 Gene

Additional Disease Information for SNED1-AS1

Open Targets Platform
Open Targets Platform

No disorders were found for SNED1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNED1-AS1 Gene

Publications for SNED1-AS1 Gene

No publications were found for SNED1-AS1 Gene.

No data available for Mastermind for SNED1-AS1 Gene

Products for SNED1-AS1 Gene

Sources for SNED1-AS1 Gene