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Aliases for SND1-IT1 Gene

Subcategory (RNA class) for SND1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SND1-IT1 Gene

  • SND1 Intronic Transcript 1 2 3 4 5
  • SND1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • C7orf54 3 4
  • NAG8 3 4
  • Brain And Nasopharyngeal Carcinoma Susceptibility Protein NSG-X 4
  • Nasopharyngeal Carcinoma Associated Gene Protein-8 2
  • Nasopharyngeal Carcinoma-Associated Gene 8 Protein 4
  • Brain And Nasopharyngeal Carcinoma Susceptibility 3
  • Nasopharyngeal Carcinoma Associated Gene 8 3
  • Chromosome 7 Open Reading Frame 54 2
  • NSG-X 3

External Ids for SND1-IT1 Gene

Previous HGNC Symbols for SND1-IT1 Gene

  • C7orf54

Previous GeneCards Identifiers for SND1-IT1 Gene

  • GC07P127639

Summaries for SND1-IT1 Gene

GeneCards Summary for SND1-IT1 Gene

SND1-IT1 (SND1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SND1-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SND1-IT1 Gene

Genomics for SND1-IT1 Gene

GeneHancer (GH) Regulatory Elements for SND1-IT1 Gene

Promoters and enhancers for SND1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I127994 Enhancer 1 Ensembl ENCODE dbSUPER 550.8 -1.7 -1670 1.8 HDAC1 TEAD4 TAL1 NRF1 DACH1 CBFA2T3 REST TCF12 HDAC2 IKZF1 SND1-IT1 LRRC4 SND1 LOC105375492 GC07P127895
GH07I127996 Enhancer 0.7 ENCODE dbSUPER 550.8 -0.7 -666 0.2 TCF12 NRF1 TEAD4 IKZF1 TAL1 CBFA2T3 SND1-IT1 LRRC4 SND1 LOC105375492 GC07P127895
GH07I127997 Enhancer 0.4 ENCODE 550.8 +0.1 77 0.9 TEAD1 CBFA2T3 TEAD3 SND1-IT1 SND1 LOC105375492
GH07I128000 Enhancer 0.8 Ensembl ENCODE 0.8 +3.5 3482 1.1 SRF RXRA NR2F1 JUNB BATF IRF4 NR2F2 BCL11A IKZF1 NBN LRRC4 SND1 SND1-IT1 LOC105375492
GH07I127986 Enhancer 1.1 ENCODE dbSUPER 0.4 -10.4 -10448 1.1 HDAC1 HDGF PKNOX1 ARNT ZBTB40 TCF12 GATA2 ATF7 CREM ZBTB11 LRRC4 SND1 SND1-IT1 LOC105375492 GC07P127895
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SND1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SND1-IT1 Gene

Genomic Locations for SND1-IT1 Gene
chr7:127,997,509-128,000,077
(GRCh38/hg38)
Size:
2,569 bases
Orientation:
Plus strand
chr7:127,637,562-127,640,130
(GRCh37/hg19)

Genomic View for SND1-IT1 Gene

Genes around SND1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SND1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SND1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SND1-IT1 Gene

Proteins for SND1-IT1 Gene

  • Protein details for SND1-IT1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9HBX3-SNIT1_HUMAN
    Recommended name:
    Uncharacterized protein encoded by SND1-IT1
    Protein Accession:
    Q9HBX3
    Secondary Accessions:
    • B3KNA6
    • O95358

    Protein attributes for SND1-IT1 Gene

    Size:
    110 amino acids
    Molecular mass:
    12922 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SND1-IT1 Gene

Post-translational modifications for SND1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SND1-IT1 Gene

Domains & Families for SND1-IT1 Gene

Protein Domains for SND1-IT1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for SND1-IT1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SND1-IT1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for SND1-IT1 Gene

Function for SND1-IT1 Gene

Phenotypes for SND1-IT1 Gene

genes like me logo Genes that share phenotypes with SND1-IT1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SND1-IT1 Gene

Localization for SND1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SND1-IT1 Gene

Pathways & Interactions for SND1-IT1 Gene

SuperPathways for SND1-IT1 Gene

No Data Available

Interacting Proteins for SND1-IT1 Gene

Gene Ontology (GO) - Biological Process for SND1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SND1-IT1 Gene

Drugs & Compounds for SND1-IT1 Gene

No Compound Related Data Available

Transcripts for SND1-IT1 Gene

mRNA/cDNA for SND1-IT1 Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(769) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SND1-IT1 Gene

SND1 intronic transcript 1 (non-protein coding):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SND1-IT1 Gene

No ASD Table

Relevant External Links for SND1-IT1 Gene

GeneLoc Exon Structure for
SND1-IT1
ECgene alternative splicing isoforms for
SND1-IT1

Expression for SND1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SND1-IT1 Gene

SOURCE GeneReport for Unigene cluster for SND1-IT1 Gene:

Hs.657377
genes like me logo Genes that share expression patterns with SND1-IT1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SND1-IT1 Gene

Orthologs for SND1-IT1 Gene

Evolution for SND1-IT1 Gene

ENSEMBL:
Gene Tree for SND1-IT1 (if available)
TreeFam:
Gene Tree for SND1-IT1 (if available)

No data available for Orthologs for SND1-IT1 Gene

Paralogs for SND1-IT1 Gene

No data available for Paralogs for SND1-IT1 Gene

Variants for SND1-IT1 Gene

Sequence variations from dbSNP and Humsavar for SND1-IT1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000129926 -- 127,999,369(+) T/C non_coding_transcript_variant
rs1001079238 -- 128,000,403(+) TGT/T downstream_transcript_variant
rs1001135104 -- 127,999,680(+) T/G non_coding_transcript_variant
rs1001961178 -- 127,996,063(+) C/T upstream_transcript_variant
rs1002852142 -- 127,996,641(+) T/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SND1-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv1024743 CNV gain 25217958

Additional Variant Information for SND1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SND1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SND1-IT1 Gene

Disorders for SND1-IT1 Gene

Additional Disease Information for SND1-IT1

No disorders were found for SND1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SND1-IT1 Gene

Publications for SND1-IT1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer SW … Tsui LC (Science (New York, N.Y.) 2003) 3 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for SND1-IT1 Gene

Sources for SND1-IT1 Gene

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